View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17533_low_11 (Length: 351)
Name: NF17533_low_11
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 407251 - 407571
Alignment:
| Q |
17 |
cacacatgttgaggtctgatcgttagcaccatgactatgatggtgcttaaattggattgatgaacagaaacggttacaaactaatcctgctattgtatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
407251 |
cacacatgttgaggtctgatcgttagcaccatgactgtgatggtgcttaaattggattgatgaacagaaacagttacagactaatcctgctattgtatct |
407350 |
T |
|
| Q |
117 |
catgtgattgtagaaactaacacaggtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttaggaag |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
407351 |
catgtgattgtagaaactaacacaagtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaag |
407450 |
T |
|
| Q |
217 |
tttgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaat |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
407451 |
tctgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagt |
407550 |
T |
|
| Q |
317 |
tttaatattctttagtagtat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
407551 |
tttaatattctttagtagtat |
407571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 416691 - 416371
Alignment:
| Q |
17 |
cacacatgttgaggtctgatcgttagcaccatgactatgatggtgcttaaattggattgatgaacagaaacggttacaaactaatcctgctattgtatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
416691 |
cacacatgttgaggtctgatcgttagcaccatgactgtgatggtgcttaaattggattgatgaacagaaacagttacagactaatcctgctattgtatct |
416592 |
T |
|
| Q |
117 |
catgtgattgtagaaactaacacaggtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttaggaag |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
416591 |
catgtgattgtagaaactaacacaagtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaag |
416492 |
T |
|
| Q |
217 |
tttgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaat |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
416491 |
tctgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagt |
416392 |
T |
|
| Q |
317 |
tttaatattctttagtagtat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
416391 |
tttaatattctttagtagtat |
416371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 38791661 - 38791823
Alignment:
| Q |
153 |
ggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttaggaagtttgtgttaagactatccatgtaatgtaatattact |
252 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38791661 |
ggacaagc-tttgacttttaggaaaaagaggaaaactaacggtgagcctttggcttttagaaagtatgtgttaagactatccatgtaatgtaatattact |
38791759 |
T |
|
| Q |
253 |
catgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaatttt |
319 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
38791760 |
aatgtctatgttatacatgtgaatgaatgaaa---gcaggaacatcaatttgtgtgcttcaagtttt |
38791823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 49963190 - 49963123
Alignment:
| Q |
223 |
ttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
49963190 |
ttaagactatccatgtaatgtaatattactcaaatctatgttatacatttcatcgaatgaaaattgca |
49963123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 6457329 - 6457413
Alignment:
| Q |
224 |
taagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgta |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| ||| ||| ||||||||| ||||| |||||| ||| |||| |
|
|
| T |
6457329 |
taagactatccatgtaatgttatattactcaaatctatgttatacatttcatcgaatgaaaattgcagacacatcattttatgta |
6457413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 7228391 - 7228322
Alignment:
| Q |
91 |
tacaaactaatcctgctattgtatctcatgtgattgtagaaactaacacaggtagtatccaaggacaagc |
160 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| || |||| ||||| ||||| ||||||| ||||||||||| |
|
|
| T |
7228391 |
tacagactaatcctactattgcatctcatgcgaatgtacaaactgacacaagtagtattcaaggacaagc |
7228322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 24346274 - 24345954
Alignment:
| Q |
17 |
cacacatgttgaggtctgatcgttagcaccatgactatgatggtgcttaaattggattgatgaacagaaacggttacaaactaatcctgctattgtatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24346274 |
cacacatgttgaggtctgatcgttagcaccatgactgtgatggtgcttaaattggattgatgaacagaaacagttacagactaatcctgctattgtatct |
24346175 |
T |
|
| Q |
117 |
catgtgattgtagaaactaacacaggtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttaggaag |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24346174 |
catgtgattgtagaaactaacacaagtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagcatttggcttttaagaag |
24346075 |
T |
|
| Q |
217 |
tttgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaat |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24346074 |
tctgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagt |
24345975 |
T |
|
| Q |
317 |
tttaatattctttagtagtat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24345974 |
tttaatattctttagtagtat |
24345954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 24358546 - 24358226
Alignment:
| Q |
17 |
cacacatgttgaggtctgatcgttagcaccatgactatgatggtgcttaaattggattgatgaacagaaacggttacaaactaatcctgctattgtatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24358546 |
cacacatgttgaggtctgatcgttagcaccatgacagtgatggtgcttaaattggattgatgaacagaaacagttacagactaatcctgctattgtatct |
24358447 |
T |
|
| Q |
117 |
catgtgattgtagaaactaacacaggtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttaggaag |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24358446 |
catgtgattgtagaaactaacacaagtagtatccaaggacaaacatttgactttaaggaaaaagagagaaaataataatgagcatttggcttttaagaag |
24358347 |
T |
|
| Q |
217 |
tttgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaat |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24358346 |
tctgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaagt |
24358247 |
T |
|
| Q |
317 |
tttaatattctttagtagtat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24358246 |
tttaatattctttagtagtat |
24358226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 1732912 - 1732948
Alignment:
| Q |
207 |
ttttaggaagtttgtgttaagactatccatgtaatgt |
243 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |
|
|
| T |
1732912 |
ttttaggaagtttgtgttaagactgtcaatgtaatgt |
1732948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 24183732 - 24184054
Alignment:
| Q |
15 |
gacacacatgttgaggtctgatcgttagcaccatgactatgatggtgcttaaattggattgatgaacagaaacggttacaaactaatcctgctattgtat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
24183732 |
gacacacatgttgaggtctgatcgttagcaccatgactgtgatggtgcttaaattggattgatgaacagaaacagttacagactaatcctgctattgtat |
24183831 |
T |
|
| Q |
115 |
ctcatgtgattgtagaaactaacacaggtagtatccaaggacaagcatttgacttttaggaaaaagagagaaaataataatgagaatttggcttttagga |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24183832 |
ctcatgtgattgtagaaactaacacaagtagtatccaaggacaaacatttgactttcaggaaaaagagagaaaataataatgagcatttggcttttagga |
24183931 |
T |
|
| Q |
215 |
agtttgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaa |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24183932 |
agtctgtgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaa |
24184031 |
T |
|
| Q |
315 |
attttaatattctttagtagtat |
337 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24184032 |
gttttaatattctttagtagtat |
24184054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 333
Target Start/End: Original strand, 20786054 - 20786218
Alignment:
| Q |
167 |
cttttaggaaaaagagagaaaataataatgagaatttggcttttaggaagtttgtgttaagactatccatgtaatgtaatattactcatgtctatgttat |
266 |
Q |
| |
|
|||| |||||||||||| ||| ||||| |||| |||||| |||||||| || ||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20786054 |
ctttcaggaaaaagaga-aaattaatattgagcatttggattttaggaggtctgt--taagactatccatgcaatgtaatattactcatgtctatgttat |
20786150 |
T |
|
| Q |
267 |
gcatgtcaatgaatgaaaagtgca-ggaacatcaatttgtgtacttcaaattttaatattctttagta |
333 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20786151 |
acatgtcaatgaataaaaagtccatctaacatcaatttgtgtacttcaagttttaatattctttagta |
20786218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 333
Target Start/End: Complemental strand, 27980247 - 27980081
Alignment:
| Q |
169 |
tttaggaaaaagagagaaaataataatgagaatttggcttttaggaagtttgtgttaagactatccatgtaatgtaatat--tactcatgtctatgttat |
266 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| |||||||||||||||||| |||||||||||| ||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
27980247 |
tttaggaaaaagagaaaaattaatagtgagcatttggcttttaggaagtctgtgttaagactgtccatgttatgtaatatattacttttgtctatgttat |
27980148 |
T |
|
| Q |
267 |
gcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaaattttaatattctttagta |
333 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
27980147 |
acatatcaatgaatgaaaagtgttggaacatcaatttgtgtacttcaagttttaatattcttaagta |
27980081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 15046547 - 15046660
Alignment:
| Q |
221 |
tgttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgca-ggaacatcaatttgtgtacttcaaatttt |
319 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||||| |||| |
|
|
| T |
15046547 |
tgttaagactatccatgcaatgtaatattactcatgtctatgttatacatgtcaatcaataaaaagtccatctaacatcaatttgtgtacttcaagtttt |
15046646 |
T |
|
| Q |
320 |
aatattctttagta |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15046647 |
aatattctttagta |
15046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 38175789 - 38175880
Alignment:
| Q |
223 |
ttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaaagtgcaggaacatcaatttgtgtacttcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| ||| ||| |||||||||| ||||| |||||| ||| |||| ||||| |
|
|
| T |
38175789 |
ttaagactatccatgtaatgtaatgttactcaaatctatgttatacatttcattgaatgaaaattgcagacacatcattttatgtatttcaa |
38175880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 15229643 - 15229704
Alignment:
| Q |
223 |
ttaagactatccatgtaatgtaatattactcatgtctatgttatgcatgtcaatgaatgaaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || ||| ||| |||||||| |
|
|
| T |
15229643 |
ttaagactatccatgtaatgtaatattactcaaatctatgtaatacatttcatcgaatgaaa |
15229704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 40442839 - 40442911
Alignment:
| Q |
169 |
tttaggaaaaagagagaaaat-aataatgagaatttggcttttaggaagtttgtgttaagactatccatgtaa |
240 |
Q |
| |
|
||||||||| |||| |||||| |||| |||||| || | || ||| ||||||||||||||||| ||||||||| |
|
|
| T |
40442839 |
tttaggaaagagagggaaaatgaatagtgagaagtttgtttatagaaagtttgtgttaagactctccatgtaa |
40442911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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