View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_13 (Length: 325)
Name: NF17533_low_13
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 25 - 325
Target Start/End: Complemental strand, 27442538 - 27442238
Alignment:
| Q |
25 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcg |
124 |
Q |
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| T |
27442538 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcg |
27442439 |
T |
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| Q |
125 |
acgacagccgacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaagg |
224 |
Q |
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| T |
27442438 |
acgacagccaacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaagg |
27442339 |
T |
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| Q |
225 |
cttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagca |
324 |
Q |
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| T |
27442338 |
cttggagagtttcaggactattgcagaattggcaagacactgctgtgaaaaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagca |
27442239 |
T |
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| Q |
325 |
c |
325 |
Q |
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| T |
27442238 |
c |
27442238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 11838064 - 11838211
Alignment:
| Q |
178 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
277 |
Q |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
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| Q |
278 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcac |
325 |
Q |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcac |
11838211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 11837897 - 11837984
Alignment:
| Q |
26 |
tatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaa |
113 |
Q |
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| T |
11837897 |
tatgatatgtcacagtcactggccgagtcaccacaaaggtagacgtatacagctatggtgtgattcttatggagatgataaccggaaa |
11837984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 11850579 - 11850666
Alignment:
| Q |
25 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaa |
112 |
Q |
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| T |
11850579 |
gtatgatatgtcacagtcaccggtcgagtcaccacaaaggtagacgtatacagctatggcgtgattcttatggagatgataaccggaa |
11850666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 11850747 - 11850894
Alignment:
| Q |
178 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
277 |
Q |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
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| Q |
278 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcac |
325 |
Q |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcac |
11850894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 325
Target Start/End: Complemental strand, 11855769 - 11855628
Alignment:
| Q |
184 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
283 |
Q |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
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| Q |
284 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcac |
325 |
Q |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcac |
11855628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 11855943 - 11855850
Alignment:
| Q |
25 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagag |
118 |
Q |
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| T |
11855943 |
gtatgatatgtcacagtcaccggccgagtcaccacaaagttagacgtgtacagctatggcgtgattcttatggagatgataaccggaaagagag |
11855850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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