View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_17 (Length: 259)
Name: NF17533_low_17
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41626201 - 41626439
Alignment:
| Q |
1 |
tgcttctgtttttgttctgtctaagttatagttgattcatcaaagttgtcctaatcagatgaatattcttggcttctcagacacaatcttccaaaacata |
100 |
Q |
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| T |
41626201 |
tgcttctgtttttgttctgtctatgttttagttgattcatcaaagttttcctaatcagatgaatattcttggcttctcagacacaatcttccaaaacata |
41626300 |
T |
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| Q |
101 |
tattgtaagagtctgagttttttgtttcaattttgatattagccttgtttcaatatgctttctccaaacacctttctgcaagattttagtgttccaaact |
200 |
Q |
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| T |
41626301 |
tattgtaagagtctgaattttttgtttcaattttgatattagccttgtttcaatatgctttctccaaacacctttctgcaagattttagtgttccaaact |
41626400 |
T |
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| Q |
201 |
cggtaaaccaagtaacaaatgggtttgaattagaagatt |
239 |
Q |
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| T |
41626401 |
cagtaaaccaagtaacaaatgggtttgaattagaagatt |
41626439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 41623242 - 41623478
Alignment:
| Q |
3 |
cttctgtttttgttctgtctaagttatagttgattcatcaaagttgtcctaatcagatgaatattcttggcttctcagacacaatcttccaaaacatata |
102 |
Q |
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| T |
41623242 |
cttctgtttttgttctgtctatggtttagttgattcatcaaagttttcctaatcagatgaatatttttggcttctgagacacaatcttccaaaacatata |
41623341 |
T |
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| Q |
103 |
ttgtaagagtctgagttttttgtttcaattttgatattagccttgtttcaatatgctttctccaaacacctttctgcaagattttagtgttccaaactcg |
202 |
Q |
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| T |
41623342 |
ttgtaagagtctgagttttttgtttcaattttgatattagccttgtttcaatatgctttctcctaacacctttctgcaagattttagtgttccaaactca |
41623441 |
T |
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| Q |
203 |
gtaaaccaagtaacaaatgggtttgaattagaagatt |
239 |
Q |
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| T |
41623442 |
gtaaaccaagtaacaaatgggtttgaattagaagatt |
41623478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 41619925 - 41620127
Alignment:
| Q |
32 |
ttgattcatcaaagttgtcctaatcagatgaatattcttggcttctcag-----acacaatcttccaaaacatata-ttgtaagagtctgagttttttgt |
125 |
Q |
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| T |
41619925 |
ttgattcatcaaaattttcctagtcatat--atattctaggcttctcaggagcaaaacaatcttccaaaacatctaattataagagtctgaatcttttgg |
41620022 |
T |
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| Q |
126 |
ttcaattttgatattagccttgtttcaatatgctttctccaaacacctttctgcaagattttagtgttccaaactcggtaaaccaagtaacaaatgggtt |
225 |
Q |
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| T |
41620023 |
ttcaagtttggtttta-------ttcaacatgcttcctcctaacacctttctgcaagattttagtgttcctaactcattgaaccatgtaacaaatgggtt |
41620115 |
T |
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| Q |
226 |
tgaattagaaga |
237 |
Q |
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| T |
41620116 |
tgagttggaaga |
41620127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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