View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_2 (Length: 438)
Name: NF17533_low_2
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 41626258 - 41625838
Alignment:
| Q |
1 |
ctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatttgataacggcaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41626258 |
ctgattaggaaaactttgatgaatcaactaaaacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatttgataacagcaa |
41626159 |
T |
|
| Q |
101 |
gaaaataagattcataaaactaaatagccgactctattttggatgataataatgattttgatatttagaatagaacaatgaagaatgaattagagtaaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41626158 |
gaaaataagattcataaaactacatagccgactctattttggatgataataatgattttgatatttagaatagaacaaagaagaatgaattagagtaaaa |
41626059 |
T |
|
| Q |
201 |
atattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaactgaagaggagctaacattgtttgatgaattggagtcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41626058 |
atattgtagacactagtgaatataaccgtggacaaacctaggaaaagttgctatctaacaactgaagaggagctaacattgtttgatgaattggagtcac |
41625959 |
T |
|
| Q |
301 |
agctttgttatatagaattcataaatgattctttctttgttctaaggaagatgctaggaaggagtatcatagccgccaatccctctttcttattatttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41625958 |
agctttgttatatagaattcataaatgattctttctttgtactaaggaagatgctaggaaggagtatcatagccgccaatccctctttcttattatttta |
41625859 |
T |
|
| Q |
401 |
tcttatgatgatatatgatat |
421 |
Q |
| |
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| T |
41625858 |
tcttatgatgatatatgatat |
41625838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 41623297 - 41622870
Alignment:
| Q |
1 |
ctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatttgataacggcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41623297 |
ctgattaggaaaactttgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatatatttgataacagcaa |
41623198 |
T |
|
| Q |
101 |
gaaaataagattcataaaactaaatagccgactctatttt-ggatgataataatgattttgatatttagaatagaacaatgaagaatgaattagagtaaa |
199 |
Q |
| |
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|||| |||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
41623197 |
gaaac-aagattcacaaaactaaatagacgactctatttttggatgataataatgatgatgatat----aatagaacaaagaagaatgaattagagtaaa |
41623103 |
T |
|
| Q |
200 |
aatattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaact--gaagaggagctaacattgtttgatgaattggagt |
297 |
Q |
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| T |
41623102 |
aatattgtagacactagtgaatataacttcggacaaacctaggaaaagttgctatccaacaactctgaagagga----aaattgtttgatgacttggagt |
41623007 |
T |
|
| Q |
298 |
cacagctttgttatatag-------------aattcataaatgattctttctttgttctaaggaagatgctaggaaggagtatcatagccgccaatccct |
384 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| |
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| T |
41623006 |
cacaactttgttatatagaattagaatatagaattcataaatgattctttctttgtactgaggaagctgctaggaaggagtatcatagccgccaacccct |
41622907 |
T |
|
| Q |
385 |
ctttcttattattttatcttatgatgatatatgatat |
421 |
Q |
| |
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|||||||||||| ||||||| |||| ||| ||||||| |
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| T |
41622906 |
ctttcttattatcttatcttgtgataatacatgatat |
41622870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 41619855 - 41619702
Alignment:
| Q |
237 |
cctaggaaatgttgccatctaacaactgaagaggagctaacattgtttgatgaattggagtcacag-ctttgttatatagaa-------ttcataaatga |
328 |
Q |
| |
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||||||||| |||| ||||||||| ||||||||| ||| ||||||| ||||| ||||||||| | |||||||||||| || ||||||||||| |
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| T |
41619855 |
cctaggaaaagttgatatctaacaagtgaagaggaactagcattgttggatgatttggagtcatactctttgttatatataaattattattcataaatga |
41619756 |
T |
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| Q |
329 |
ttctttc-tttgttctaaggaagatgctaggaagga---gtatcatagccgcca |
378 |
Q |
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||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
41619755 |
ttctttcttttgtactaaggaagctgctaggaaggaagggtatcatagccgcca |
41619702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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