View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_4 (Length: 419)
Name: NF17533_low_4
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 35733399 - 35733796
Alignment:
| Q |
1 |
aaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcagccagagccattttgatgtatgcacaatgcacaatgcacaatacgat |
100 |
Q |
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| T |
35733399 |
aaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcag-------------gatgtatgcacaatgcacaat-------acgat |
35733478 |
T |
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| Q |
101 |
taaaaagtttgagcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctcttcaagttcactgagccagtaaatcacaaagacactcccnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733479 |
taaaaagtttgagcaaagaaaataaggtaggatacatacaataaaaaa-gcaacctctcttcaagttcactgagccagtaaatcacaaagacactcccaa |
35733577 |
T |
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| Q |
201 |
nnnnnttaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcattctaccaagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733578 |
aaaaattaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcattctaccaagcag |
35733677 |
T |
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| Q |
301 |
gctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacacgaccaaaaacagtttagaatagtttaggaagatcactttaccaacaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733678 |
gctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacatgaccaaaaacagtttagaatagtttaggaagatcactttaccaacaaca |
35733777 |
T |
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