View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17533_low_5 (Length: 418)
Name: NF17533_low_5
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 23769388 - 23769796
Alignment:
| Q |
1 |
ccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattacaacaactggaatatcttccctcaatttgtcaatcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23769388 |
ccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattacaacaactggaatatcttccctcaatttgtcaatcatca |
23769487 |
T |
|
| Q |
101 |
tttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatatagaaaaatcaaatcaaattaagcttgtgagttttaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23769488 |
tttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatatagaaaaatcaaatcaaattaagcttgtgagttttaaga |
23769587 |
T |
|
| Q |
201 |
atattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatacattatttaagnnnnnnnnaaccatctgatttttcagggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
23769588 |
atattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatgcattatttaagttttttttaaccatctgatttttcagggaa |
23769687 |
T |
|
| Q |
301 |
aaggagttctcgtaattcataattcgatcagaaggtaagtaaagccttattgatgaatgtaaaacataggatcactaaaaatacctctctagacccatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23769688 |
aaggagttctcgtaattcataattcgatcagaaggtaagtaaagtcttattgatgaatgtgaaacatagggtcactaaaaatacctctctagacccatct |
23769787 |
T |
|
| Q |
401 |
ccttcatct |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
23769788 |
ccttcatct |
23769796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University