View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17533_low_8 (Length: 378)
Name: NF17533_low_8
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 37079000 - 37078654
Alignment:
| Q |
14 |
aagaatatgtttagtatccatgaaacaaacgcatcctaagtgtttttctttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccctc |
113 |
Q |
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| T |
37079000 |
aagaatatgtttagtatccatgaaacaaatgcatcctaagtgtttttctttttctcaacatgaaacagaacaaaatgtgcagtgcactctctaaaccctc |
37078901 |
T |
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| Q |
114 |
atcactatagctaaaaaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaat |
213 |
Q |
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| T |
37078900 |
atcactatagctaacaaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaat |
37078801 |
T |
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| Q |
214 |
catttattaacacttcctaaaatcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaagctatgggc |
313 |
Q |
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| T |
37078800 |
catttattaacacttcctaaaatcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaagctatgggc |
37078701 |
T |
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| Q |
314 |
caataacaaagcatgcaatgcaacaaaacataattggataataaaca |
360 |
Q |
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| T |
37078700 |
caataacaaagcatgcaatgcaacaaaacataattggataataaaca |
37078654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 37064754 - 37064584
Alignment:
| Q |
139 |
atgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaacacttcctaaa---- |
234 |
Q |
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| T |
37064754 |
atgaaatacataaaaggttgggtagataattaaacgaagtattgaaaattgagttaggcaagcaccatgttaaatcatttattaaaactttatcaattcc |
37064655 |
T |
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| Q |
235 |
---atcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaa |
304 |
Q |
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| T |
37064654 |
catttcataattgaatgtattctggaa--atggtggaatgagcctattttcaatcaatgagaaacaaaacaaa |
37064584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 37068980 - 37068830
Alignment:
| Q |
63 |
ttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccctcatcactatagctaaaaaccttgaatatgaaatacatgaaaggtaaagtt |
162 |
Q |
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| T |
37068980 |
ttttctcgacatgaaacagtaaacaatgtgca-------ctctaaatcctcatcactatagctaacaacct--caaatgaaatacatgaaagttcgggtt |
37068890 |
T |
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| Q |
163 |
gatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaa |
223 |
Q |
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| T |
37068889 |
gatcattgaattaagtattgaatattttgttt-gtaggtaccatgttcaatcatttattaa |
37068830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 37064543 - 37064508
Alignment:
| Q |
307 |
tatgggccaataacaaagcatgcaatgcaacaaaac |
342 |
Q |
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| T |
37064543 |
tatgggccaataacaaagcatgcagtgcaacaaaac |
37064508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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