View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17533_low_9 (Length: 368)
Name: NF17533_low_9
Description: NF17533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17533_low_9 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 24183709 - 24183372
Alignment:
| Q |
13 |
aatattaaccttcaagacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24183709 |
aatattaaccttcaaaacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
24183610 |
T |
|
| Q |
113 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaaacaagccttcacacagtaacaatatttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24183609 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaatt----acaagccttcacacagtaacaatatttcag |
24183514 |
T |
|
| Q |
213 |
tttgatatggccagcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24183513 |
tttgatatggccaacagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
24183414 |
T |
|
| Q |
313 |
atattttactgagttggtatacttctaattattgtgataatt |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24183413 |
atattttactaagttggtatacttctaattattgtgataatt |
24183372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 20785816 - 20785780
Alignment:
| Q |
41 |
gtctacaggctgcattgaacacttcagcaaaggaaga |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
20785816 |
gtctacaggctgcattgaacacttcagcaaaggaaga |
20785780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 407226 - 406889
Alignment:
| Q |
13 |
aatattaaccttcaagacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
407226 |
aatattaaccttcaaaacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
407127 |
T |
|
| Q |
113 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaaacaagccttcacacagtaacaatatttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
407126 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaatt----acaagccttcacacagtaacaatatttcag |
407031 |
T |
|
| Q |
213 |
tttgatatggccagcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
407030 |
tttgatatggccaacagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
406931 |
T |
|
| Q |
313 |
atattttactgagttggtatacttctaattattgtgataatt |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
406930 |
atattttactaagttggtatacttctaattattgtgataatt |
406889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 416716 - 417053
Alignment:
| Q |
13 |
aatattaaccttcaagacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
416716 |
aatattaaccttcaaaacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
416815 |
T |
|
| Q |
113 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaaacaagccttcacacagtaacaatatttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
416816 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaatt----acaagccttcacacagtaacaatatttcag |
416911 |
T |
|
| Q |
213 |
tttgatatggccagcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
416912 |
tttgatatggccaacagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcctgtaaccaaaaacatatttagagcagaacaaaac |
417011 |
T |
|
| Q |
313 |
atattttactgagttggtatacttctaattattgtgataatt |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
417012 |
atattttactaagttggtatacttctaattattgtgataatt |
417053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 6456591 - 6456508
Alignment:
| Q |
99 |
agcctctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaa |
182 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| | | ||| |||||||||| |||||||||||||||| |
|
|
| T |
6456591 |
agcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtgctacctcatccaataatagatatatgtaattacaa |
6456508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 6760256 - 6760339
Alignment:
| Q |
99 |
agcctctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaa |
182 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||| | | ||| |||||||||| |||||||||||||||| |
|
|
| T |
6760256 |
agcctctaaatcctaagccgcctttatttttacctcttcccaatctgtgctacctcatccaataatagatatatgtaattacaa |
6760339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 24358571 - 24358911
Alignment:
| Q |
13 |
aatattaaccttcaagacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358571 |
aatattaaccttcaaaacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
24358670 |
T |
|
| Q |
113 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaaacaagccttcacacagtaacaatatttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24358671 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaatt----acaagccttcacacagtaacaatatttcag |
24358766 |
T |
|
| Q |
213 |
tttgatatggccagcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaata---tcctgtaaccaaaaacatatttagagcagaacaa |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24358767 |
tttgatatggccatcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatcgtcctgtaaccaaaaacatatttagagcagaacaa |
24358866 |
T |
|
| Q |
310 |
aacatattttactgagttggtatacttctaattattgtgataatt |
354 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24358867 |
aacatattttactaagttggtatacttctaattattgtgataatt |
24358911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 24346299 - 24346559
Alignment:
| Q |
13 |
aatattaaccttcaagacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24346299 |
aatattaaccttcaaaacacccaaagccgtctacaggctgcattgaacacttcagcaaaggaagaagcataatgcactatactaacagcctctaaatcct |
24346398 |
T |
|
| Q |
113 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaattacaaacaagccttcacacagtaacaatatttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24346399 |
aagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgtaatt----acaagccttcacacagtaacaatatttcag |
24346494 |
T |
|
| Q |
213 |
tttgatatggccagcagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatc |
277 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24346495 |
tttgatatggccaacagtgcttgcacgctttcattcagtgccagaagccaaccatgatcaatatc |
24346559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 4204098 - 4204022
Alignment:
| Q |
99 |
agcctctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaataatacatatatgta |
175 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
4204098 |
agcctctaaatcctaagctgcctttgtttttacctcttccaaatatgtcctagctcatccaataacacatatatgta |
4204022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 7276701 - 7276747
Alignment:
| Q |
99 |
agcctctaaatcctaagccacctttgtttttacctcttcccaatctg |
145 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
7276701 |
agcctctaattcctaagccgcctttgtttttacctcttccaaatctg |
7276747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 39676282 - 39676159
Alignment:
| Q |
63 |
ttcagcaaaggaagaagcataatgcactatactaaca----gcctctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtcc |
158 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
39676282 |
ttcagcaaaggaagaaacatcctgcacaatactaacaacatgcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcctacctcatcc |
39676183 |
T |
|
| Q |
159 |
aataatacatatatgtaattacaa |
182 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39676182 |
aataatacatatatgtaattacaa |
39676159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 7197007 - 7197070
Alignment:
| Q |
99 |
agcctctaaatcctaagccacctttgtttttacctcttcccaatctgtcccagctcgtccaata |
162 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7197007 |
agcctctaaatcctaagccgcctttgtttttacctcttcccaatctgtcccagctcatccaata |
7197070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 15046289 - 15046252
Alignment:
| Q |
41 |
gtctacaggctgcattgaacacttcagcaaaggaagaa |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15046289 |
gtctacaggctgcattgaacacttcagcaaaggaagaa |
15046252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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