View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17534_low_1 (Length: 599)

Name: NF17534_low_1
Description: NF17534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17534_low_1
NF17534_low_1
[»] chr7 (7 HSPs)
chr7 (13-253)||(6103180-6103431)
chr7 (269-524)||(6102803-6103060)
chr7 (357-484)||(4257433-4257560)
chr7 (275-340)||(41712378-41712443)
chr7 (351-425)||(42513138-42513212)
chr7 (351-484)||(30456248-30456380)
chr7 (276-340)||(49017213-49017277)
[»] chr4 (7 HSPs)
chr4 (287-579)||(24733455-24733755)
chr4 (355-569)||(12637867-12638082)
chr4 (495-578)||(24736058-24736141)
chr4 (276-489)||(36050600-36050813)
chr4 (276-489)||(36053859-36054072)
chr4 (356-468)||(45735973-45736086)
chr4 (417-484)||(55322485-55322552)
[»] chr2 (6 HSPs)
chr2 (293-489)||(45327421-45327618)
chr2 (355-571)||(28860610-28860823)
chr2 (287-340)||(31211899-31211952)
chr2 (287-340)||(31193263-31193316)
chr2 (276-325)||(40400909-40400958)
chr2 (383-484)||(40401006-40401107)
[»] chr1 (4 HSPs)
chr1 (355-579)||(16544230-16544451)
chr1 (388-579)||(25541200-25541394)
chr1 (351-489)||(23405551-23405689)
chr1 (276-404)||(18583886-18584015)
[»] chr3 (2 HSPs)
chr3 (387-484)||(14029259-14029356)
chr3 (351-404)||(36326511-36326564)
[»] chr8 (5 HSPs)
chr8 (278-340)||(11825086-11825148)
chr8 (351-489)||(44765210-44765348)
chr8 (351-482)||(44761910-44762041)
chr8 (295-340)||(23090090-23090135)
chr8 (351-398)||(14276637-14276685)
[»] chr5 (4 HSPs)
chr5 (276-404)||(24108719-24108848)
chr5 (351-425)||(8123528-8123602)
chr5 (451-489)||(41709470-41709508)
chr5 (287-340)||(671548-671601)
[»] chr6 (2 HSPs)
chr6 (351-425)||(4834719-4834793)
chr6 (351-425)||(33242848-33242922)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 6e-94; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 6103431 - 6103180
Alignment:
Q  13 ggtgttaggatgtgttgttgttgaagataagtaaaattcagagaaggagttattagttattacagtgttggagatgaaacaaataaggagtaa-ttttag 111  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6103431 ggtgttaggatgtgttgttgttgaagacaagtaaaagtcagggaaggagttattagttattacagtgttggagatgaaacaaataaggagtaatttttag 6103332  T
Q  112 tttagggattttgatgtctgatgtaat-taataa----gcaattgttatgttagaattgagtgaaatgattgagtagtctctctgaattgttcttgattg 206  Q
    |||||||| |||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6103331 tttagggaatttgatgtctgatgtaatataataaatatgcaattgttatgttagaattgagtgaaatgattgagtagtctctttgaattgttcttgattg 6103232  T
Q  207 a-----atcaagggtgaaaaatacgtgtaggttttgttttaatatgttgatg 253  Q
    |     ||||||||||||||||| ||||||||||||||||||||||||||||    
T  6103231 aaagtgatcaagggtgaaaaatatgtgtaggttttgttttaatatgttgatg 6103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 269 - 524
Target Start/End: Complemental strand, 6103060 - 6102803
Alignment:
Q  269 atgttattgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaagnnnnnnn--tttattatatttttcattg 366  Q
    ||||||||||||| ||  ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||         || ||||||||||||||||    
T  6103060 atgttattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattg 6102961  T
Q  367 attctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaa 466  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6102960 attctaatcatgaaagatacaatgcttatataggtttggggatgtttattataagataactaaaatggctacataatagcgcttcttagtaactacctaa 6102861  T
Q  467 tagaatatgcctaaaagacccttctagtaactagttgaatcgttattactttactaga 524  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  6102860 tagaatatgcctaaaagactcttctggtaactagttgagtcgttattactttactaga 6102803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 357 - 484
Target Start/End: Original strand, 4257433 - 4257560
Alignment:
Q  357 tttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagt 456  Q
    ||||||||||||| |||||||||   ||||||| ||| |||||||||| |||| |||||||||||||||||| ||  |||||| ||||||||||||||||    
T  4257433 tttttcattgattttaatcatgaggcatacaatacttttataggcttgtggatcctcattataagataactacaacagctacacaatagcgcttcttagt 4257532  T
Q  457 aactatctaatagaatatgcctaaaaga 484  Q
    ||||| |||||||||||||  |||||||    
T  4257533 aactaactaatagaatatgtttaaaaga 4257560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 41712443 - 41712378
Alignment:
Q  275 ttgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    ||||||||||  ||||| |||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagagaaaactagagacaaaag 41712378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 42513138 - 42513212
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataa 425  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||| |||| | || ||||| |||||||||    
T  42513138 attatatttttcattgattctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataa 42513212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 484
Target Start/End: Complemental strand, 30456380 - 30456248
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgctt 450  Q
    |||||||||||||||  |||||||||| |   ||| ||||||||||||| |||  | || ||||| |||||||||||| ||   ||||| |||||| ||     
T  30456380 attatatttttcattcgttctaatcataaggcatataatgcttatatagacttt-gcatactcataataagataactacaacaactacacaatagcactg 30456282  T
Q  451 cttagtaactatctaatagaatatgcctaaaaga 484  Q
    || | |||| | |||||||||||||| |||||||    
T  30456281 ctcaataacaaactaatagaatatgcttaaaaga 30456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 49017277 - 49017213
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaatta-agagagaaaattagagataaaag 340  Q
    |||||||||  ||||| | ||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  49017277 tgatacgacctaattcgaatagggatcacactccataaattagagagag-aaactagagataaaag 49017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 287 - 579
Target Start/End: Complemental strand, 24733755 - 24733455
Alignment:
Q  287 aattcaagtagggatcacactccataaattaagagagaaaattagagataaaagnnnnnnnttt-attatatttttcattgattctaatcatgaaagata 385  Q
    |||||||||||||||||||||  | | |||||||||||||| |||| |||||||        || |||||||||||||||  |||||||||||||| |||    
T  24733755 aattcaagtagggatcacactttagatattaagagagaaaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaacata 24733656  T
Q  386 caatgcttatataggcttgaggatgctcatta-------taagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcct 478  Q
    |||||||||||||||| || ||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  24733655 caatgcttatataggcatgtggatgctcattagtcattataagataactacaatggctacataatagcgcttcttagtaactaactaatagaataggcct 24733556  T
Q  479 aaaagacccttctagtaactagttgaatcgttattactttactagaataaaatgagtcacccatgaatctctcttcgggattatacgctctttgggactt 578  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  24733555 aaaatacccttctagaaactagttgagtcgttattactttactagaataaaatgagtcacccatgaatctcacttcgagattgtacgctctttgcgactt 24733456  T
Q  579 c 579  Q
    |    
T  24733455 c 24733455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 355 - 569
Target Start/End: Complemental strand, 12638082 - 12637867
Alignment:
Q  355 tatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttctta 454  Q
    ||||||||||||||| | |||||||   ||||||||||| |||| ||||| |||| |||||||||||||||||| || ||||||| ||||||||||||||    
T  12638082 tatttttcattgattattatcatgaggcatacaatgcttttataagcttgtggatcctcattataagataactacaacggctacacaatagcgcttctta 12637983  T
Q  455 gtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttattactttactagaataaaatg-agtcacccatgaatctctctt 553  Q
    || |||| |||||||||||||| ||||||| ||| |||| | ||||  || || |||||  ||||||||||||| ||| ||||||||||||| || ||||    
T  12637982 gtcactaactaatagaatatgcttaaaagatcctcctagaatctagccgagtcattattcttttactagaataagatgaagtcacccatgaacctttctt 12637883  T
Q  554 cgggattatacgctct 569  Q
    |||| || ||||||||    
T  12637882 cgggcttgtacgctct 12637867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 495 - 578
Target Start/End: Complemental strand, 24736141 - 24736058
Alignment:
Q  495 aactagttgaatcgttattactttactagaataaaatgagtcacccatgaatctctcttcgggattatacgctctttgggactt 578  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| |||||||||  ||||||||| || ||||||||||||||    
T  24736141 aactagttgagtcgttattactttactaaaataaaatgagtcacctatgaatctcctttcgggattgtatgctctttgggactt 24736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 489
Target Start/End: Complemental strand, 36050813 - 36050600
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaag-nnnnnnntttattatatttttcattgattctaat 374  Q
    |||||||||  ||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||        || |||||||||||||||    || ||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatttttcatt-tccctcat 36050715  T
Q  375 catgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatat 474  Q
     || |   |||||||| |||||||| |||| | || | |||  |||| |||||| || ||||||  ||||||  | ||||||||||| ||||||||||||    
T  36050714 aataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatat 36050615  T
Q  475 gcctaaaagaccctt 489  Q
    |||||||||| ||||    
T  36050614 gcctaaaagatcctt 36050600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 489
Target Start/End: Complemental strand, 36054072 - 36053859
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaag-nnnnnnntttattatatttttcattgattctaat 374  Q
    |||||||||  ||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||        || |||||||||||||||    || ||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatttttcatt-tccctcat 36053974  T
Q  375 catgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatat 474  Q
     || |   |||||||| |||||||| |||| | || | |||  |||| |||||| || ||||||  ||||||  | ||||||||||| ||||||||||||    
T  36053973 aataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatat 36053874  T
Q  475 gcctaaaagaccctt 489  Q
    |||||||||| ||||    
T  36053873 gcctaaaagatcctt 36053859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 468
Target Start/End: Complemental strand, 45736086 - 45735973
Alignment:
Q  356 atttttcattgattctaatc-atgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttctta 454  Q
    |||||||||||||||||||| ||||   ||||||||||||| |||  ||| | |||||||| |||| ||||||| || || |||| |||||  |||||||    
T  45736086 atttttcattgattctaatctatgaggcatacaatgcttatgtagatttgtgaatgctcataataatataactacaacggttacacaatagaacttctta 45735987  T
Q  455 gtaactatctaata 468  Q
    ||||||| ||||||    
T  45735986 gtaactaactaata 45735973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 55322485 - 55322552
Alignment:
Q  417 ataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaaga 484  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||| ||||||||||||||||||||||    
T  55322485 ataagataactacaataactacacaatagcactgcttaataactaactaatagaatatgcctaaaaga 55322552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 293 - 489
Target Start/End: Original strand, 45327421 - 45327618
Alignment:
Q  293 agtagggatcacactccataaattaagagagaaaattagagataaaagnnnnnnn-tttattatatttttcattgattctaatcatgaaagatacaatgc 391  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||  |||| || || | | |||||||||    
T  45327421 agtagggatcacactccagaaattaagagagaaaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaatgc 45327520  T
Q  392 ttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaagaccctt 489  Q
    |||||||| |||| | || | |||  ||||||||||| || ||||||| |||||   | ||||||||||| |||||||||||||||||||||| ||||    
T  45327521 ttatatagacttgtgcatacacatagtaagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaagatcctt 45327618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 355 - 571
Target Start/End: Complemental strand, 28860823 - 28860610
Alignment:
Q  355 tatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttctta 454  Q
    ||||||||||||||| |||||||||   || |  ||||| |||||| ||| |||| |||||||||||||| ||| || |||   | |||| || ||||||    
T  28860823 tatttttcattgattttaatcatgaggcattcggtgcttttataggtttgtggatcctcattataagata-ctacaacggccgtacaataacgtttctta 28860725  T
Q  455 gtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttattactttactagaataaaatgagtcacccatgaatctctcttc 554  Q
    ||||||| |||||| ||||||||||||||| |||||||  |||||| ||| || |||||  ||||||||||||| |||||||| ||||| | ||||||||    
T  28860724 gtaactaactaatataatatgcctaaaagatccttctaaaaactagatgagtcattatt-ttttactagaataagatgagtca-ccatgtacctctcttc 28860627  T
Q  555 gggattatacgctcttt 571  Q
    ||| || ||||||||||    
T  28860626 gggcttgtacgctcttt 28860610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 31211952 - 31211899
Alignment:
Q  287 aattcaagtagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  31211952 aattcgagtagggatcacactccagaaattaagagagaaaactagagataaaag 31211899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 31193316 - 31193263
Alignment:
Q  287 aattcaagtagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    ||||| |||||||||||||||| | |||||||||||||||| ||||||| ||||    
T  31193316 aattcgagtagggatcacactctagaaattaagagagaaaactagagatgaaag 31193263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 40400909 - 40400958
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaattaagagagaa 325  Q
    ||||| |||| ||||| |||||||||||||||||| ||||| ||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaaatttagagagaa 40400958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 484
Target Start/End: Original strand, 40401006 - 40401107
Alignment:
Q  383 atacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaa 482  Q
    |||| ||||||| |||| |||| | || ||||| |||||||||||| || | ||| ||||||||  | |||| |||||| |||| ||||||||| |||||    
T  40401006 atactatgcttaaatagacttgtgcatactcatgataagataactacaacgactatataatagcagtgcttaataactaactaagagaatatgcttaaaa 40401105  T
Q  483 ga 484  Q
    ||    
T  40401106 ga 40401107  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 355 - 579
Target Start/End: Complemental strand, 16544451 - 16544230
Alignment:
Q  355 tatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttctta 454  Q
    ||||||||||||||| |||| ||| |   ||||| |||| |||| ||||| ||||  ||||  ||||||||||| |||||| ||||||||||||||||||    
T  16544451 tatttttcattgattataatgatgca---tacaaggcttttatatgcttgtggatcttcatcgtaagataactacaatggccacataatagcgcttctta 16544355  T
Q  455 gtaactatctaatagaatatgcctaaaagacccttctagtaactagttgaatcgttattactttactagaataaaatgagtcacccatgaatctctcttc 554  Q
    ||||||| ||| |||| ||||||||||||| |||||||  ||||| |||| ||||| ||  ||||||||||| | | |||||||  ||||| ||||||||    
T  16544354 gtaactaactagtagagtatgcctaaaagatccttctaaaaactacttgagtcgttcttcttttactagaatgagacgagtcacttatgaacctctcttc 16544255  T
Q  555 gggattatacgctctttgggacttc 579  Q
     |  || || |||||||| ||||||    
T  16544254 agacttgtatgctctttgtgacttc 16544230  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 388 - 579
Target Start/End: Original strand, 25541200 - 25541394
Alignment:
Q  388 atgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagt-aactatctaatagaatatgcctaaaagacc 486  Q
    |||||| |||| ||||| |||| ||||||||| |||||||| || ||||| | |||||| ||||||||| ||||| |||||| ||||   |||||||| |    
T  25541200 atgcttttataagcttgtggatcctcattataggataactacaacggctatacaatagcacttcttagtaaactacctaataaaatacatctaaaagatc 25541299  T
Q  487 cttctagtaactagttgaatcgttattactttactagaataaaat--gagtcacccatgaatctctcttcgggattatacgctctttgggacttc 579  Q
    ||| ||| ||| || ||| || ||||   ||| ||| ||||| ||  |||||||||||||| ||||||||| | || ||||||||||| ||||||    
T  25541300 cttttagaaaccagctgagtcattatccttttgctataataagatgagagtcacccatgaacctctcttcgagcttgtacgctctttgtgacttc 25541394  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 489
Target Start/End: Original strand, 23405551 - 23405689
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgctt 450  Q
    ||||||||||||||||||||| || || |   |||||||| ||| |||| |||| | || | |||  ||||||||||| || ||||||| |||||   |     
T  23405551 attatatttttcattgattctcataataaggcatacaatgtttagatagacttgtgcatacacatagtaagataactacaacggctacacaatagtattg 23405650  T
Q  451 cttagtaactatctaatagaatatgcctaaaagaccctt 489  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  23405651 cttagtaactaactaatagaatatgcctaaaagatcctt 23405689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 276 - 404
Target Start/End: Original strand, 18583886 - 18584015
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaag-nnnnnnntttattatatttttcattgattctaat 374  Q
    |||||||||  ||||| ||||| ||| |||||||| |||||||||||||||| ||||||||||||        || | ||||||||||||||||||| ||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaagaaaggaaattcagtatatttttcattgattctcat 18583985  T
Q  375 catgaaagatacaatgcttatataggcttg 404  Q
     || ||  ||||||||||||||||| ||||    
T  18583986 aataaagcatacaatgcttatatagacttg 18584015  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 14029356 - 14029259
Alignment:
Q  387 aatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgcttcttagtaactatctaatagaatatgcctaaaaga 484  Q
    |||| ||||||||||||| | || |||||||||||||||||| || ||||||| |||| | || ||||||||||| |||||||||||||| |||||||    
T  14029356 aatgtttatataggcttgtgcatactcattataagataactacaacggctacacaataacactgcttagtaactaactaatagaatatgcttaaaaga 14029259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 36326564 - 36326511
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttg 404  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||| ||||    
T  36326564 attatatttttcattgattctcataataaagcatacaatgcttatatagacttg 36326511  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 11825148 - 11825086
Alignment:
Q  278 atacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  11825148 atacgactcaattcgaatagggatcacactccataaattaagagagaaaattaaagataaaag 11825086  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 489
Target Start/End: Complemental strand, 44765348 - 44765210
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgctt 450  Q
    ||||||||||||||||||| | || || |   |||||||| |||||||| |||| | || | |||  |||| |||||| || ||||||  ||||||  |     
T  44765348 attatatttttcattgattttcataataaggaatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattg 44765249  T
Q  451 cttagtaactatctaatagaatatgcctaaaagaccctt 489  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  44765248 cttagtaactaactaatagaatatgcctaaaagatcctt 44765210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 482
Target Start/End: Complemental strand, 44762041 - 44761910
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataactaaaatggctacataatagcgctt 450  Q
    ||||||||||||||||||| | || || |   |||||||| |||||||| |||| | || | |||  |||| |||||| || ||||||| ||||||  |     
T  44762041 attatatttttcattgattttcataataaggcatacaatgtttatatagacttgtgcatacacatagtaagctaactacaacggctacacaatagcattg 44761942  T
Q  451 cttagtaactatctaatagaatatgcctaaaa 482  Q
    ||||||||||| ||||||||||||| ||||||    
T  44761941 cttagtaactaactaatagaatatgtctaaaa 44761910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 23090135 - 23090090
Alignment:
Q  295 tagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    |||| ||| |||||||||||||| |||||||||| |||||||||||    
T  23090135 taggaatcgcactccataaattatgagagaaaatcagagataaaag 23090090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 14276637 - 14276685
Alignment:
Q  351 attatatttttcattgattctaatcatgaaaga-tacaatgcttatata 398  Q
    ||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  14276637 attatatttttcattgattttaatcatgaagcattacaatgcttatata 14276685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 276 - 404
Target Start/End: Complemental strand, 24108848 - 24108719
Alignment:
Q  276 tgatacgactaaattcaagtagggatcacactccataaattaagagagaaaattagagataaa-agnnnnnnntttattatatttttcattgattctaat 374  Q
    |||||||||  ||||| |||||||||||||||||| ||||||||  |||||| |||||| ||| |        || |||||||||||||||| |||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaat 24108749  T
Q  375 catgaaagatacaatgcttatataggcttg 404  Q
    ||| | | ||||||||||||||||| ||||    
T  24108748 cataagacatacaatgcttatatagacttg 24108719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 8123602 - 8123528
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataa 425  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||| |||| | || ||||| |||||||||    
T  8123602 attatatttttcattgattctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataa 8123528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 41709508 - 41709470
Alignment:
Q  451 cttagtaactatctaatagaatatgcctaaaagaccctt 489  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41709508 cttagtaactaactaatagaatatgcctaaaagatcctt 41709470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 671601 - 671548
Alignment:
Q  287 aattcaagtagggatcacactccataaattaagagagaaaattagagataaaag 340  Q
    ||||| ||| ||||||||||| || |||||||||||||||  ||||||||||||    
T  671601 aattcgagttgggatcacacttcagaaattaagagagaaagctagagataaaag 671548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 4834793 - 4834719
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataa 425  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||| |||  | || ||||| |||||||||    
T  4834793 attatatttttcattgattctaataatgaggcatacaatgcttatatagacttatgcatactcataataagataa 4834719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 33242922 - 33242848
Alignment:
Q  351 attatatttttcattgattctaatcatgaaagatacaatgcttatataggcttgaggatgctcattataagataa 425  Q
    ||||||||||||||||||||| || || |   ||||||||||||||||| |||| | || ||||| |||||||||    
T  33242922 attatatttttcattgattctcataataaggcatacaatgcttatatagacttgtgcatactcataataagataa 33242848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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