View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17534_low_3 (Length: 300)
Name: NF17534_low_3
Description: NF17534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17534_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 7970097 - 7969837
Alignment:
| Q |
21 |
aatgattatcatgtgctacgcgtggcctatagggtgatttactgagatgtcttcttcttggttggttaagaactgaacctgttattgaaggtgatgatgg |
120 |
Q |
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| T |
7970097 |
aatgattatcatgtgctacgcgtggcctatagggtgatttactgagatgtcttcttcttggttggttaagaactgaacctgttattgaaggtgatgatgg |
7969998 |
T |
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| Q |
121 |
gacttcaaattcaaaccttgaagggtgtctcttgtggagtgtcataggacttttgttccttagatacaaagcttttgtttcttctggactcaaagtcatg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969997 |
gacttcaaattcaaaccttgaagggtgtctcttgtggagtgtcataggacttttgttccttagatacaaagcttttgtttcttctggactcaaagtcatg |
7969898 |
T |
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| Q |
221 |
ttgttctttcttcctcgttcatgacgtggagtgtcttgccactccgtctctgtgtctgatg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969897 |
ttgttctttcttcctcgttcatgacgtggagtgtcttgccactccgtctctgtgtctgatg |
7969837 |
T |
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