View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17534_low_6 (Length: 227)

Name: NF17534_low_6
Description: NF17534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17534_low_6
NF17534_low_6
[»] chr6 (2 HSPs)
chr6 (123-221)||(8155850-8155948)
chr6 (25-123)||(8156016-8156114)
[»] chr3 (2 HSPs)
chr3 (123-218)||(47951534-47951629)
chr3 (188-221)||(47951648-47951681)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 8155948 - 8155850
Alignment:
Q  123 aggaaatgcagcaattaggcacttctaaggtctaacaaaatggatcataggattgcgagtttgtcctaggtaggaaactatttccatacaagaataata 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8155948 aggaaatgcagcaattaggcacttctaaggtctaacaaaatggatcataggattgcgagtttgtcctaggtaggaaactatttccttacaagaataata 8155850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 8156114 - 8156016
Alignment:
Q  25 gtataaacacggtcaaataactctggcgcccaattagactctcctctcccgttcatgacaccaccgtacgaaagaagatctatcactgttgttgccgga 123  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8156114 gtataaacacggtcaaataactctggcagccaattagactctcctctcccgttcatgacaccaccgtaccaaagaagatctatcactgttgttgccgga 8156016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 47951534 - 47951629
Alignment:
Q  123 aggaaatgcagcaattaggcacttctaaggtctaacaaaatggatcataggattgcgagtttgtcctaggtaggaaactatttccatacaagaata 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||| ||||    
T  47951534 aggaaatgctgcaattaggcacttctaaggtctaacaaaatggatcaaaggattgcgcgattgtcctaggtaggaaactatttccgtacaaaaata 47951629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 47951648 - 47951681
Alignment:
Q  188 ctaggtaggaaactatttccatacaagaataata 221  Q
    ||||||||||||||||||||||||||||||||||    
T  47951648 ctaggtaggaaactatttccatacaagaataata 47951681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University