View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17535_high_11 (Length: 367)

Name: NF17535_high_11
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17535_high_11
NF17535_high_11
[»] chr2 (4 HSPs)
chr2 (14-253)||(41573898-41574137)
chr2 (254-345)||(6016847-6016938)
chr2 (256-345)||(36316286-36316377)
chr2 (261-333)||(12015132-12015206)
[»] chr5 (8 HSPs)
chr5 (256-345)||(31185993-31186082)
chr5 (254-346)||(35309147-35309241)
chr5 (254-345)||(39040539-39040631)
chr5 (254-341)||(35304676-35304765)
chr5 (254-297)||(27405306-27405349)
chr5 (254-345)||(43233869-43233963)
chr5 (254-333)||(25213827-25213907)
chr5 (254-333)||(25277977-25278057)
[»] scaffold0263 (1 HSPs)
scaffold0263 (253-342)||(22958-23049)
[»] chr7 (7 HSPs)
chr7 (253-345)||(7737355-7737450)
chr7 (254-333)||(35130603-35130683)
chr7 (256-345)||(36647489-36647581)
chr7 (253-333)||(48821854-48821936)
chr7 (254-333)||(40772871-40772952)
chr7 (165-223)||(26701674-26701732)
chr7 (33-151)||(26701528-26701649)
[»] chr8 (5 HSPs)
chr8 (253-345)||(11080219-11080313)
chr8 (254-345)||(4678151-4678243)
chr8 (256-345)||(4676206-4676296)
chr8 (254-333)||(26174323-26174404)
chr8 (260-345)||(37890-37976)
[»] chr3 (5 HSPs)
chr3 (254-345)||(39091329-39091422)
chr3 (254-344)||(35610873-35610966)
chr3 (254-333)||(27825693-27825773)
chr3 (254-297)||(33785884-33785927)
chr3 (261-332)||(19439528-19439601)
[»] chr1 (3 HSPs)
chr1 (254-344)||(41418132-41418223)
chr1 (254-333)||(9905790-9905869)
chr1 (254-333)||(9908181-9908260)
[»] chr4 (4 HSPs)
chr4 (254-333)||(27510483-27510564)
chr4 (252-333)||(13436432-13436514)
chr4 (135-209)||(39073708-39073781)
chr4 (253-332)||(11001294-11001373)
[»] chr6 (4 HSPs)
chr6 (87-223)||(4485041-4485176)
chr6 (24-223)||(6672999-6673202)
chr6 (253-333)||(6860169-6860251)
chr6 (257-344)||(9231562-9231651)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-205)||(9198-9386)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 41573898 - 41574137
Alignment:
Q  14 atatatatccaggttctgttcctttttattatgttttc-tcttcgcactaaatagtgcacattcatagcccatc-agtttttgcactgctatatcctcaa 111  Q
    ||||||||| ||||||||||||||||||||  |||| | | ||||||||||||||||||||  ||||||||  | |||||||||| || |||||||||||    
T  41573898 atatatatctaggttctgttcctttttatt--gtttccattttcgcactaaatagtgcacacccatagccccactagtttttgcaatgttatatcctcaa 41573995  T
Q  112 gcaggccataaatcatcctcctaagctttcatcaccacaagttaactgagaggttttttacctttcgaagaagctgcaacaaatttgaaaacatcaaaga 211  Q
    ||| |||||  |||| ||||||||||||||||||| ||||||| ||  ||| |||||||||| ||||||||| ||||||||||||||||||||| || ||    
T  41573996 gcatgccatcgatcaacctcctaagctttcatcacaacaagttgaccaagatgttttttacc-ttcgaagaacctgcaacaaatttgaaaacataaagga 41574094  T
Q  212 agaaaattatatcaataca-catgtctctgctcatattctttc 253  Q
    | ||||||||||  ||| | |||||||||||||||||||||||    
T  41574095 ataaaattatattgatatatcatgtctctgctcatattctttc 41574137  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 6016847 - 6016938
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactcagaatatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaactcagaatatttctattgatgataaaagtgaatgttacaatgataagagata 6016938  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 36316286 - 36316377
Alignment:
Q  256 ttaggaaacatgatatccaatgaaggaatgggagaaaactcag--aatatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaatgatatgagata 36316377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 12015206 - 12015132
Alignment:
Q  261 aaacatgatatccaatgaaggaatgggagaaaactcaga--atatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||| ||| ||||| ||||||||||| |  |||||| ||||||| |||||||||||||||||||    
T  12015206 aaacatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaa 12015132  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 31185993 - 31186082
Alignment:
Q  256 ttaggaaacatgatatccaatgaaggaatgggagaaaactcagaatatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactcataatatttctattgatgataaaagtgaatattacaatgatatgagata 31186082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 35309147 - 35309241
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactca--gaatatttctattgatcataaaagtgaatattacaatgataagagatag 346  Q
    |||||||||||||||||||||||||||||||| || |||  |||  |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  35309147 tgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattacaatgataagagatag 35309241  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 39040539 - 39040631
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactcaga--atatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    |||||||||||||||||||||   |||||||| ||||||||| |||  || ||||||||||| |||||||||||||||||||||||||||||||    
T  39040539 tgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaatgataagagata 39040631  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 35304676 - 35304765
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactcaga--atatttctattgatcataaaagtgaatattacaatgataaga 341  Q
    |||||||||||||||||| |||||||| |||| ||  || ||||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  35304676 tgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatattataatgataaga 35304765  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 27405306 - 27405349
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactca 297  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  27405306 tgttaggaaacatgatatccaatgaaggaatgagagaaaactca 27405349  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 43233963 - 43233869
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattac-aatgataagagata 345  Q
    ||||||||||||||  |||||  ||||||||| ||||||||||  ||||| ||||||||||| |||||  |||||||||| ||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaatgataagagata 43233869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 25213907 - 25213827
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaact--cagaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||||||||||||| |||||| |||||||||   | ||| ||| ||||||| || ||||||||||||||||    
T  25213907 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25213827  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 25278057 - 25277977
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaact--cagaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||||||||||||| |||||| |||||||||   | ||| ||| ||||||| || ||||||||||||||||    
T  25278057 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25277977  T

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Target: scaffold0263 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 23049 - 22958
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaatgataagag 342  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||    
T  23049 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaatgataagag 22958  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 7737450 - 7737355
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaact--cagaatatttctattgatcataaaagtgaatattac-aatgataagagata 345  Q
    ||||||||||||||||||||||||||||||||| |||||||||   ||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  7737450 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagagata 7737355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 35130683 - 35130603
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||||||||||||||||||||||||||||| ||||||||||  | ||| ||| ||||||| || ||||||||||||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaa 35130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 36647489 - 36647581
Alignment:
Q  256 ttaggaaacatgatatccaatgaaggaatgggagaaaact--cagaatatttctattgatcataaaagtgaatatta-caatgataagagata 345  Q
    |||| ||||||||||||||||||| ||||| |||||||||   ||||||||||||||||| |||||| ||||||| |  ||||||||||||||    
T  36647489 ttagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatataagaaatgataagagata 36647581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 48821854 - 48821936
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||| |||||||||||||||  |||| |||| ||||||||||  ||||| ||||||||||| ||||| |||||||||||||    
T  48821854 ctgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaa 48821936  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 40772871 - 40772952
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||| |||||| |||| ||| ||||||||| ||||||||||  | ||| ||| ||||||| |||||||||||||||||||    
T  40772871 tgttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 40772952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 26701674 - 26701732
Alignment:
Q  165 ttttttacctttcgaagaagctgcaacaaatttgaaaacatcaaa-gaagaaaattatat 223  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  26701674 ttttttacctt-cgaagaacctgcaacaaatttgaaaacatgaaaggaataaaattatat 26701732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 26701528 - 26701649
Alignment:
Q  33 tcctttttattatgttttctctt-cgcactaaatagtgcacattcatag-cccatcagtttt-tgcactgctatatcctcaagcaggccataaatcatcc 129  Q
    |||||||| ||||| ||||| || || ||||| |||||||||||||||| ||||  |||||| |||| ||| ||||||||||||| ||||   || | ||    
T  26701528 tcctttttgttatgctttctttttcggactaagtagtgcacattcatagccccactagttttctgcaatgcaatatcctcaagcatgccaacgattagcc 26701627  T
Q  130 tcctaagctttcatcaccacaa 151  Q
     ||| |||||||||||||||||    
T  26701628 cccttagctttcatcaccacaa 26701649  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 11080313 - 11080219
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    ||||||||||||||||||||||||||| ||||| || |||||||  |||||||||||||| || |||||||||||||||| ||||||||||||||    
T  11080313 ctgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatattaaaatgataagagata 11080219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 4678243 - 4678151
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactcaga--atatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    |||||||||||||||||||||  ||||||||| ||||||||| |||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaatgataagagata 4678151  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 4676296 - 4676206
Alignment:
Q  256 ttaggaaacatgatatccaatgaaggaatgggagaaaactcaga--atatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    |||||||||||||||||||  ||||||||| ||||||||| |||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  4676296 ttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaatgataagagata 4676206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 26174404 - 26174323
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||  | ||| ||| ||||||| |||||||||||||||||||    
T  26174404 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 26174323  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 37976 - 37890
Alignment:
Q  260 gaaacatgatatccaatgaaggaatgggagaaaactcagaatatttctattgatcataaaagtgaatattac-aatgataagagata 345  Q
    |||| ||||||||||||||||||||| ||||||| | |||   |||||||| || |||||||||||| |||| ||||||||||||||    
T  37976 gaaatatgatatccaatgaaggaatgagagaaaattaagagactttctatttatgataaaagtgaatgttacaaatgataagagata 37890  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 39091329 - 39091422
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaatgataagagata 345  Q
    ||||| |||||||||||||||||||||||||| ||||||||||  | ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaatgataaaagata 39091422  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 35610966 - 35610873
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattac-aatgataagagat 344  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||| |||||||||| |||||| |||| ||||| |||||||||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaatgataagagat 35610873  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 27825693 - 27825773
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||||||||||||||||||||||||||||| ||||||||||  | ||| ||| ||||||| || ||||||||||||||||    
T  27825693 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 27825773  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 33785927 - 33785884
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactca 297  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  33785927 tgttaggaaacatgatatccaatgaaggaatgagagaaaactca 33785884  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 19439601 - 19439528
Alignment:
Q  261 aaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattaca 332  Q
    ||||||||||||||| ||||||||| ||||||||||  | ||| ||| ||||||| ||||||||||||||||||    
T  19439601 aaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattaca 19439528  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 41418223 - 41418132
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactcagaatatttctattgatcataaaagtgaatattac-aatgataagagat 344  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||| | |||| |||||| ||||||||||||||||| |||||||||||||    
T  41418223 tgttaggaaacatgatatccaatgaaggaattagagaaaactaagattctttcaattgatgataaaagtgaatattacaaatgataagagat 41418132  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 9905790 - 9905869
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||||||||||  |||||||| ||||||||||  | ||| ||| ||||||| || ||||||||||||||||    
T  9905790 tgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 9905869  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 9908181 - 9908260
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||||||||||  |||||||| ||||||||||  | ||| ||| ||||||| || ||||||||||||||||    
T  9908181 tgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 9908260  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 27510483 - 27510564
Alignment:
Q  254 tgttaggaaacatgatatccaatgaaggaatgggagaaaact--cagaatatttctattgatcataaaagtgaatattacaa 333  Q
    |||||||||||||||||||||||||||||||| |||||||||   ||||| ||||||||||| |||||||||||||||||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaa 27510564  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 13436432 - 13436514
Alignment:
Q  252 tctgttaggaaacatgatatccaatgaaggaatgggagaaaactc-agaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||||||||||||||||  ||  |||||||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  13436432 tctgttaggaaacatgatatttaagaaaggaatgagagaaaactcaagattatttttattgatgataaaagtgaatattacaa 13436514  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 39073781 - 39073708
Alignment:
Q  135 agctttcatcaccacaagttaactgagaggttttttacctttcgaagaagctgcaacaaatttgaaaacatcaaa 209  Q
    |||||||||||||||||||| ||   ||||||||| || ||| ||| || |||||||||||||||||||||||||    
T  39073781 agctttcatcaccacaagttgacaacgaggtttttcactttt-gaaaaacctgcaacaaatttgaaaacatcaaa 39073708  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 11001294 - 11001373
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaactc-agaatatttctattgatcataaaagtgaatattaca 332  Q
    ||||||||||||||||||||||  |||| | ||  ||||||||| ||||| ||| ||||||| |||||||||||| |||||    
T  11001294 ctgttaggaaacatgatatccatggaagaactgaaagaaaactcaagaat-tttttattgatgataaaagtgaatgttaca 11001373  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 4485176 - 4485041
Alignment:
Q  87 agtttttgcactgctatatcctcaagcaggccataaatcatcctcctaagctttcatcaccacaagttaactgagaggttttttacctttcgaagaagct 186  Q
    |||||||||| ||| ||||||||||||| | ||| ||||| |||||||||||||||||| |||||||| ||  ||||| |||||||| ||| |||||  |    
T  4485176 agtttttgcaatgcaatatcctcaagcatgacatcaatcaacctcctaagctttcatcatcacaagttgaccaagagg-tttttacc-ttcaaagaactt 4485079  T
Q  187 gcaacaaatttgaaaacat-caaagaagaaaattatat 223  Q
    ||||||||||| ||||||| ||| ||| ||||||||||    
T  4485078 gcaacaaatttaaaaacatccaaggaataaaattatat 4485041  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 6673202 - 6672999
Alignment:
Q  24 aggttctgttcctttttattatgttttc-tcttcgcactaaatagtgcacattcatagcccatc-agtttttgcactgctatatcctcaagcaggccata 121  Q
    |||||||  |||||||||||||| |||| | |||||||||| |||||||||| ||||||||  | ||||| |||| ||| |||||||| |||| |||       
T  6673202 aggttctaatcctttttattatgctttcattttcgcactaagtagtgcacatccatagccccactagtttctgcaatgcaatatcctctagcatgcctat 6673103  T
Q  122 aatcatcctcctaagctttcatcaccacaagttaactgagaggtttttt--acctttcgaagaagctgcaacaaatttgaaaacat-caaagaagaaaat 218  Q
     || | || ||| |||||||||||||||||||| ||  | |||||||||  ||||| ||||||| ||||||||||||||||||||| ||| ||| |||||    
T  6673102 gattagcccccttagctttcatcaccacaagttgaccaaaaggttttttttacctt-cgaagaacctgcaacaaatttgaaaacatccaaggaataaaat 6673004  T
Q  219 tatat 223  Q
    |||||    
T  6673003 tatat 6672999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 6860251 - 6860169
Alignment:
Q  253 ctgttaggaaacatgatatccaatgaaggaatgggagaaaactc--agaatatttctattgatcataaaagtgaatattacaa 333  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||  | ||| ||| ||||||| |||||||||||||||||||    
T  6860251 ctgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 6860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 9231651 - 9231562
Alignment:
Q  257 taggaaacatgatatccaatgaaggaatgggagaaaactca--gaatatttctattgatcataaaagtgaatattacaa-tgataagagat 344  Q
    |||||||||||||||||   |||| |||| ||||| |||||  |||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  9231651 taggaaacatgatatccgtggaag-aatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaagtgataagagat 9231562  T

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Target: scaffold0007 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 9198 - 9386
Alignment:
Q  16 atatatccaggttctgttcctttttattatgttttc-tcttcgcactaaatagtgcacattcatagcccatc-agtttttgcactgctatatcctcaagc 113  Q
    |||||| ||| || ||||||||||||||||  |||| | ||| |||||| |||||||||| ||||||||  | |||||||| | ||| ||||||||||||    
T  9198 atatatacagattttgttcctttttattattctttcattttcacactaagtagtgcacatccatagccccactagtttttgaa-tgcaatatcctcaagc 9296  T
Q  114 aggccataaatcatcctcctaagctttcatcaccacaagttaactgagaggttttttacctttcgaagaagctgcaacaaatttgaaaacat 205  Q
    | || |   || | || ||| |||||||||||||||||||| ||  | || ||||||||||| ||||||| |||||||||||||||||||||    
T  9297 atgcgaccgattagcc-ccttagctttcatcaccacaagttgaccaaaagattttttacctt-cgaagaacctgcaacaaatttgaaaacat 9386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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