View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_high_19 (Length: 318)
Name: NF17535_high_19
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_19 |
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| [»] scaffold0433 (2 HSPs) |
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Alignment Details
Target: scaffold0433 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 62 - 301
Target Start/End: Original strand, 988 - 1227
Alignment:
| Q |
62 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
988 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
1087 |
T |
|
| Q |
162 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgggaaaaggaggttggtttttgcactttccattttttctactta |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1088 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgagaaaaggaggttggtttttgcactttcaattttttctactta |
1187 |
T |
|
| Q |
262 |
ttttaatattttgaacattgccatgacaatggaagtatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1188 |
ttttaatattttgaacattgccatgacaatggaagtatat |
1227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 819 - 862
Alignment:
| Q |
19 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
62 |
Q |
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| T |
819 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 62 - 301
Target Start/End: Complemental strand, 3859689 - 3859450
Alignment:
| Q |
62 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3859689 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
3859590 |
T |
|
| Q |
162 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgggaaaaggaggttggtttttgcactttccattttttctactta |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3859589 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgagaaaaggaggttggtttttgcactttcaattttttctactta |
3859490 |
T |
|
| Q |
262 |
ttttaatattttgaacattgccatgacaatggaagtatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3859489 |
ttttaatattttgaacattgccatgacaatggaagtatat |
3859450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 62 - 301
Target Start/End: Complemental strand, 3868446 - 3868207
Alignment:
| Q |
62 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
161 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3868446 |
gaaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataaattaaagtagtaaaacttatttttggttgaagttgatttc |
3868347 |
T |
|
| Q |
162 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgggaaaaggaggttggtttttgcactttccattttttctactta |
261 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3868346 |
aaaactttcttgtcgaccttgaaatttcaagaacctttcacaggtttaaccagtttgagaaaaggaggttggtttttgcactttcaattttttctactta |
3868247 |
T |
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| Q |
262 |
ttttaatattttgaacattgccatgacaatggaagtatat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
3868246 |
ttttaatattttgaacattgccatgacaatggaagtatat |
3868207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 3859858 - 3859815
Alignment:
| Q |
19 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3859858 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
3859815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 3868615 - 3868572
Alignment:
| Q |
19 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
62 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3868615 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
3868572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 13011567 - 13011608
Alignment:
| Q |
260 |
tattttaatattttgaacattgccatgacaatggaagtatat |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
13011567 |
tattttaatattttgaacattgacatgacaatggaattatat |
13011608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 3854902 - 3854861
Alignment:
| Q |
260 |
tattttaatattttgaacattgccatgacaatggaagtatat |
301 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |||| |
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| T |
3854902 |
tattttaatattctgaacattggcatgacaatggaagcatat |
3854861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 43518124 - 43518066
Alignment:
| Q |
63 |
aaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43518124 |
aaatagagactatggttcatgtgaatatgttttcaagatttgttgtatattgcaaataa |
43518066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 43518289 - 43518246
Alignment:
| Q |
19 |
gaaggctgaacaagttttggtcaggaagaatgctgagaaatgtg |
62 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43518289 |
gaaggctgaacaaattttggtcaggaagaatgctgagaaatgtg |
43518246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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