View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_high_22 (Length: 305)
Name: NF17535_high_22
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 76 - 288
Target Start/End: Complemental strand, 40441278 - 40441066
Alignment:
| Q |
76 |
caatttgatgaagataccggtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441278 |
caatttgatgaagataccagtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
40441179 |
T |
|
| Q |
176 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441178 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
40441079 |
T |
|
| Q |
276 |
aaaactcacacag |
288 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40441078 |
aaaactcacacag |
40441066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40441527 - 40441466
Alignment:
| Q |
17 |
aagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441527 |
aagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa |
40441466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 12664892 - 12664953
Alignment:
| Q |
17 |
aagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa |
78 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
12664892 |
aagtctcaaattcaagagtgtagtaaagcttatggagcatcgtcaataacttcaacctacaa |
12664953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University