View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_high_25 (Length: 285)
Name: NF17535_high_25
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 7356662 - 7356914
Alignment:
| Q |
15 |
acatcatcatcatatttatcatcatcagctttgttgtctttaaccaagaataagcaaaacgcaaactttgaacacaaactatacataaaaaacaagatag |
114 |
Q |
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| T |
7356662 |
acatcatcatcatatttatcatcatcatctttgttgtctttaaccaagaataagcaaaacgcaaactttgaacacaaactttacatagaaaacaagatag |
7356761 |
T |
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| Q |
115 |
agtcaaattaactagtcaacaccaaattcatatcaaattcaactacacaaaaataaaacataatttgaaaaaacacatacttgttattcaagaggttttt |
214 |
Q |
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| T |
7356762 |
agtcaaattaactagtcaacaccaaattcatatcaaattcaactacacaaaaataaaacataatttgaaaaaacacatacttgttattcaagaggttttt |
7356861 |
T |
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| Q |
215 |
gacagcaactttagtatcttcaataagaacaccataataagcaattccataat |
267 |
Q |
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| T |
7356862 |
gacagcaactttagtatcttcaataagaacaccataataagcaattccataat |
7356914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 29790941 - 29791044
Alignment:
| Q |
163 |
aaaaataaaacataatttgaaaaaacacatacttgttattcaagaggtttttgacagcaactttagtatcttcaataagaacaccataataagcaattcc |
262 |
Q |
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| T |
29790941 |
aaaaaaaaaacagaatttaaaaaaacacatacttgttattcaagagatttttgacagcaactttagtaccatccgtaagaacaccatggtaaacaattcc |
29791040 |
T |
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| Q |
263 |
ataa |
266 |
Q |
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|||| |
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| T |
29791041 |
ataa |
29791044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 29790873 - 29790922
Alignment:
| Q |
58 |
ccaagaataagcaaaacgcaaactttgaacacaaactatacataaaaaac |
107 |
Q |
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| T |
29790873 |
ccaagcataagcaaaactcaaactttcaacacaaactatacatagaaaac |
29790922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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