View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_high_5 (Length: 462)
Name: NF17535_high_5
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 2744807 - 2744369
Alignment:
| Q |
8 |
ggtagattattctccctccattagataaacaatcttcaacctcataaagtttatcttcaccgtcgaacatttggaccttccattttcttattgctgcaac |
107 |
Q |
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| T |
2744807 |
ggtacatttttctccctccattggataaacaatcttcaacctcatgaagtttatcttcaccgtcgaacatttggaccttccattttcttattgctgcaac |
2744708 |
T |
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| Q |
108 |
aaaaacttgacaaaacctaggaagagggtttccagcaggtttaaagtatctatattttgatgtgccacaaagaaacaaaaccaatgctagggcagcagaa |
207 |
Q |
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| T |
2744707 |
aaaaacttgacaaaacctaggaagagggtttccaacaggtttaaagtatctatattttgatgtgccacaaagaaacaaaaccaatgctagggcagcagaa |
2744608 |
T |
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| Q |
208 |
ccagctgatacacaaaatcccaaagtccaaagtccatcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaa |
307 |
Q |
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| T |
2744607 |
ccagctgagacacaaaatcccaaagtccaaagtccatcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaa |
2744508 |
T |
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| Q |
308 |
aatagctaaaaaatgctatttttgagtgttgttcactaggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatt |
407 |
Q |
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| T |
2744507 |
aatagctaaaaaatgctatttttgagtgttgttcactaggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatt |
2744408 |
T |
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| Q |
408 |
tcctaaggctactagataaatggatacatagaataaagt |
446 |
Q |
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| T |
2744407 |
tcctaaggctactagataaatggatacatagaataaagt |
2744369 |
T |
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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 416
Target Start/End: Complemental strand, 40743092 - 40742920
Alignment:
| Q |
244 |
tcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaaaatagctaaaaaatgctatttttgagtgttgttcac |
343 |
Q |
| |
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||||||||||||||| |||| || ||||||||||| ||||| |||| |||||| ||||| ||||| |||||||||||||| | |||||| | || |
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| T |
40743092 |
tcatcttcaaaatagcccaaaatagtgtttgagaaaagtgaaccaaggttcaatgccaagtaaaagtagctaaaaaatgccacttttgaataactctcct |
40742993 |
T |
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| Q |
344 |
taggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatttcctaaggc |
416 |
Q |
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| T |
40742992 |
ttgagtgatcttcatcaaattggtcagcaccaaatgttgcaatgtttggttgataccctccatttcctaaggc |
40742920 |
T |
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