View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_high_7 (Length: 400)
Name: NF17535_high_7
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 44493393 - 44493222
Alignment:
| Q |
1 |
ctgtgagtttctctgtacgtagagacagcaagatatatacttatcttcattcaagttaaatgctttattagtttatttgaactctctctatatggaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44493393 |
ctgtgagtttctctgtacgtagagacagcaagatatatacttatcttcattcaagttaaatgctttattagtttatttgaactctctctatatggaaggt |
44493294 |
T |
|
| Q |
101 |
taagcatacttgtatcatttcgttctatatatctacactgactaatctagtagtagcagccctttcctataa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44493293 |
taagcatacttgtatcatttcgttctatatatctacactgactaatctagtagtagcagccctttcctataa |
44493222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 44492673 - 44492580
Alignment:
| Q |
301 |
ggatccccctgaactactcagtgtacgtgtctaattcaactatacaaaatcggtttataaaaactatgtacttataaacaaatgttcatctcac |
394 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
44492673 |
ggatccccctgaactactcaatgtacgtgtttaattcaactatacaaaatcgatttataaaaactatctacttataaacaaatgttcatatcac |
44492580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 44492811 - 44492741
Alignment:
| Q |
170 |
taacaaagcaacttagaggttggggaaccc-------aagtaaccaaatttagattcaatttttcatgtta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
44492811 |
taacaaagcaacttagaggttggggaacccaagtcccaagtaaccaaatttagatttaatttttcatgtta |
44492741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University