View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_high_9 (Length: 373)
Name: NF17535_high_9
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 3209461 - 3209802
Alignment:
| Q |
18 |
aattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgt |
117 |
Q |
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| T |
3209461 |
aattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgt |
3209560 |
T |
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| Q |
118 |
ttgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagttagcatagcatct |
217 |
Q |
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| T |
3209561 |
ttgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatct |
3209660 |
T |
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| Q |
218 |
tacttgttagaaatttcaagatatataaattaaggtacttgcatggtgatgtccgctagtacgttatttgatccggtttacaatcggtggcgttagacac |
317 |
Q |
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| T |
3209661 |
tacttgttagaaatttcaagatatataaattaaggtacttgcatggtgatgtccgctagtacgttatttgatccggtttacaatcggtggcgttagacac |
3209760 |
T |
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| Q |
318 |
aaatatttatgaacgattgtacatgtatatttcttttatttt |
359 |
Q |
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| T |
3209761 |
aaatatttatgaacgattgtacatgtatatttcttttatttt |
3209802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 3203487 - 3203736
Alignment:
| Q |
18 |
aattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203487 |
aattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgt |
3203586 |
T |
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| Q |
118 |
ttgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagttagcatagcatct |
217 |
Q |
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| T |
3203587 |
ttgggaaagatacatgaaaatctcttgcagttaagttatatagtgtggagggaaaatgattgacatgggtgttaacgataacacagctagcatagcatct |
3203686 |
T |
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| Q |
218 |
tacttgttagaaatttcaagatatataaattaaggtac-ttgcatggtga |
266 |
Q |
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| T |
3203687 |
tacttgttaaaaatttcaagatatataaattaaggtactttgcatggtga |
3203736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 3217409 - 3217509
Alignment:
| Q |
18 |
aattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagttagttccatcttggttaaggtcatgt |
117 |
Q |
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|||| ||||||||||| |||||||||| | | || ||||||| ||||||||||||| |||||| |||||||| |||||||||||| ||| | |||||| |
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| T |
3217409 |
aatttttggtatttatttgctgaagtttgacatatgcttagcaggagaatgaaaccaagaagcaagattggagtgagttccatcttgtttatgttcatgt |
3217508 |
T |
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| Q |
118 |
t |
118 |
Q |
| |
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| T |
3217509 |
t |
3217509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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