View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_1 (Length: 756)
Name: NF17535_low_1
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 125 - 743
Target Start/End: Original strand, 41763972 - 41764587
Alignment:
| Q |
125 |
aataaaaaatgatccaagtcnnnnnnntttaacatgagtatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaa-tcttatg |
223 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41763972 |
aataaaaaatgatccaagtcaaaaaaatttaacatgaatatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaaatcttatg |
41764071 |
T |
|
| Q |
224 |
gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagcagtaaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764072 |
gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagcagtaaa |
41764171 |
T |
|
| Q |
324 |
tggaaaacaaacacaagacatagactatgttccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaataatacacaacannnnnnnnnnc |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764172 |
tggaaaacaaacacaagacatagactatgttccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaataatacacaacattttttt---- |
41764267 |
T |
|
| Q |
424 |
ttctatcctaaatattctacttacatttggtttgtttgatataattcactgacctaattttgcaaaattttatttaacaggagttacttagaaatggaga |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764268 |
ttctatcctaaatattctacttacatttggtttgtttgatataattcactgacctaattttgcaaaattttatttaacaggagttacttagaaatggaga |
41764367 |
T |
|
| Q |
524 |
aacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatca |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764368 |
aacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatca |
41764467 |
T |
|
| Q |
624 |
aatggagatgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgta |
723 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764468 |
aatggagatgaatgataaattcataacaaaagaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgta |
41764567 |
T |
|
| Q |
724 |
cgagactctcgtgctgatga |
743 |
Q |
| |
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||||||||||||||| |||| |
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| T |
41764568 |
cgagactctcgtgcttatga |
41764587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 493 - 725
Target Start/End: Original strand, 41756395 - 41756627
Alignment:
| Q |
493 |
ttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagata |
592 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| | || |
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| T |
41756395 |
ttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagta |
41756494 |
T |
|
| Q |
593 |
tatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttatag |
692 |
Q |
| |
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|||||||||||||||||| ||||||| || || |||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
41756495 |
tatactccatggaaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttag |
41756594 |
T |
|
| Q |
693 |
tgtagcaatgatggtccattatgtctatgtacg |
725 |
Q |
| |
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||| |||| ||||||||| | |||||||||||| |
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| T |
41756595 |
tgtggcaaagatggtccaatttgtctatgtacg |
41756627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 22488488 - 22488596
Alignment:
| Q |
17 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaag |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22488488 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgctatcaag |
22488587 |
T |
|
| Q |
117 |
catttttca |
125 |
Q |
| |
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||||||||| |
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|
| T |
22488588 |
catttttca |
22488596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 232 - 402
Target Start/End: Original strand, 41756122 - 41756292
Alignment:
| Q |
232 |
cagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaaaagcagtaaatggaaaac |
331 |
Q |
| |
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|||||||||||||| || |||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| | || | |
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| T |
41756122 |
cagaaaccaaacctaccaagaaaattcagcatcttagacagaaccgaagctggtctactacaagctagagctgcaataagaaaagcaagaaacgagaatc |
41756221 |
T |
|
| Q |
332 |
aaacacaagacatagactatgttccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaata |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
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|
| T |
41756222 |
gaacacaagacatagactatgttccaacaggaccaatgtatcacaatcctaattcatttcacaggtaaata |
41756292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 8557996 - 8558103
Alignment:
| Q |
17 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
8557996 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcatgcatgttattctgtcgtgctatcaag |
8558095 |
T |
|
| Q |
117 |
catttttc |
124 |
Q |
| |
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|||||||| |
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|
| T |
8558096 |
catttttc |
8558103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 500 - 608
Target Start/End: Complemental strand, 26974161 - 26974053
Alignment:
| Q |
500 |
acaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactc |
599 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||| || |||||||||||| | |||||||| |
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|
| T |
26974161 |
acaggagctacttagaaatggagaaacagttcaaagtattcgtctacgaagaaggggagcctccggtttttcacaatggaccttgcaaaagcatatactc |
26974062 |
T |
|
| Q |
600 |
catggaagg |
608 |
Q |
| |
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||||||||| |
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| T |
26974061 |
catggaagg |
26974053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 33508262 - 33508361
Alignment:
| Q |
26 |
aataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttca |
125 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| || || | ||||||||||||| ||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
33508262 |
aataaataattaataaaatgaaaaacgattcatcaaacggcttaagatatgtcgtgtgccttcgtgcttgtcactatgtcgtgctatcaagcatttttca |
33508361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 13798461 - 13798515
Alignment:
| Q |
77 |
tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaataaaa |
131 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
13798461 |
tcgtgtgccttcgtgcttgttaatatgtcgtgctatcaagcatttttcaataaaa |
13798515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 11210277 - 11210326
Alignment:
| Q |
77 |
tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaa |
126 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
11210277 |
tcgtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttcaa |
11210326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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