View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_low_12 (Length: 360)
Name: NF17535_low_12
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_12 |
 | |
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| [»] scaffold0236 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 43703877 - 43703533
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43703877 |
acaacccaattcccattcttttctttgggctgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
43703778 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43703777 |
tattaatattgcaactatcaagataacagaaaaagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
43703678 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43703677 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
43703578 |
T |
|
| Q |
301 |
tgcatagactccaacgatttattgctgaaccagctgaagctatat |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
43703577 |
tgcatagactccaacgatttatcgctgaaccatctgaggctatat |
43703533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 43714848 - 43714504
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714848 |
acaacccaattcccattcttttctttgggctgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
43714749 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714748 |
tattaatattgcaactatcaagataacagaaaaagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
43714649 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43714648 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
43714549 |
T |
|
| Q |
301 |
tgcatagactccaacgatttattgctgaaccagctgaagctatat |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
43714548 |
tgcatagactccaacgatttatcgctgaaccatctgaggctatat |
43714504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 43687019 - 43686675
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43687019 |
acaacccaagtcccattcttatcattggactgatactcgctggtttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
43686920 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||| | |||| ||| || | ||| | | | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43686919 |
tataagtattacaaagataaggattattgtaaaagatcctgccggtacttcaaagtttgaatttgaaatgatatgtctgtctaaggataaagcttgcagc |
43686820 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
43686819 |
aatccaaatgagcctccaatgttaatagacattgtgattccagttgaccacaatggaataactttaataatggctttcaattcttcaacttgatctactg |
43686720 |
T |
|
| Q |
301 |
tgcatagactccaacgatttattgctgaaccagctgaagctatat |
345 |
Q |
| |
|
|||| |||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
43686719 |
tgcagagactccaacgatttattatggaaccatctgaggctatat |
43686675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 43728582 - 43728244
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | || || |||||||||| ||||||||||| ||||||||||||||| || |||| | |||||| |
|
|
| T |
43728582 |
acaacccaattcccattcttatctttggactgatcctaactggtttccctcttagctttgatgctagaggaataagaacacggtcgtagagtactatcca |
43728483 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||| ||||||| | ||| || ||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
43728482 |
tataaatattgaacctaccatgataacactaaaagatcctgctggtacttcaaagtttgaggt------gatatgtctgtctaaggatttagcttgcagc |
43728389 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
||||||||||| || |||||||||| |||||| ||||| |||| ||||| |||||||||||| ||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
43728388 |
aatccaaatgatccaccaatgttaagagacatcatgatccctgtagaccataatggaataactctaacaagggcttttagttcttctacttgatctactg |
43728289 |
T |
|
| Q |
301 |
tgcatagactccaacgatttattgctgaaccagctgaagctatat |
345 |
Q |
| |
|
|||| || |||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
43728288 |
tgcagagtctccaaggatttattgctgaaccatctgaggctatat |
43728244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 23750 - 24056
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||| | || || ||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
23750 |
acaaaccaattcccattcttttctttgcaccgatcttaactggtttccctcttatctttgatgctaaaggaataagaacgagatcatagaaaactatcca |
23849 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||| | || | |||||| | |||||| ||||||| ||||| |||||||||| | || |||||||||||| |||| ||||||||| ||| |
|
|
| T |
23850 |
tataattaaagtaactataataataacactcaaagatcccgctggaacttcaaagt------tggaggtgatatgtctgttcaaggttttagcttgaagc |
23943 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
||||||||||| ||||| | | ||| | ||| ||||| | | ||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
23944 |
aatccaaatgaacctcccacgctaagggtcatcatgatcccactagaccataatggaataactctaacaatggcttttagttcttctacttgatctactg |
24043 |
T |
|
| Q |
301 |
tgcatagactcca |
313 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
24044 |
tgcatagattcca |
24056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 25273978 - 25273672
Alignment:
| Q |
1 |
acaacccaattcccattcttttctttggactgataattacgggcttccctcttatctttgatgctaaaggaataagaacacgatcatagataattatcca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| | || || ||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
25273978 |
acaaaccaattcccattcttttctttgcactgatcttaactggtttccctcttatctttgatgctaaaggaataagaacgcgatcatagaaaactatcca |
25273879 |
T |
|
| Q |
101 |
tattaatattgcaactatcaagataacagaataagatcctgctggtacttcaaagtttgaacttgaaatgatatgtctgtctaaggatttagcttgcagc |
200 |
Q |
| |
|
||| | || | | |||| ||||||| ||||||| ||||| |||||||||| | || |||||||||||| |||| ||||||||| ||| |
|
|
| T |
25273878 |
tataattaccgtacctatattgataacactcaaagatcccgctggaacttcaaagt------tggaggtgatatgtctgttcaaggttttagcttgaagc |
25273785 |
T |
|
| Q |
201 |
aatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttcttcaacttgatctactg |
300 |
Q |
| |
|
||||||||||| | ||| ||| ||| | ||| ||||| | | ||||| |||||||||||| ||| ||||||||| | |||||| || |||||||||| |
|
|
| T |
25273784 |
aatccaaatgaacttcccatgctaagggtcatcatgatcccactagaccataatggaataactctaacaatggctttaaattcttctacctgatctactg |
25273685 |
T |
|
| Q |
301 |
tgcatagactcca |
313 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
25273684 |
tgcatagattcca |
25273672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 2690440 - 2690312
Alignment:
| Q |
186 |
gatttagcttgcagcaatccaaatgagcctccaatgttaatagacattgtgatcgctgttgaccacaatggaataactttaataatggcttttagttctt |
285 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2690440 |
gatttcgcttgcagtaatccaaatgagcctccaatgttaagtgacatcaagatacttgtagaccacaatggaataactttaataatagcttttaattctt |
2690341 |
T |
|
| Q |
286 |
caacttgatctactgtgcatagactccaa |
314 |
Q |
| |
|
| |||||||| | |||||||||||||||| |
|
|
| T |
2690340 |
ctacttgatcaattgtgcatagactccaa |
2690312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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