View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_13 (Length: 352)
Name: NF17535_low_13
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 12791195 - 12790845
Alignment:
| Q |
10 |
cacagaacactgataattcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttgcctacttgttgcgttctctatacgcttcatttg |
109 |
Q |
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|||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12791195 |
cacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtctacttgttgcgttctctatacgcttcatttg |
12791096 |
T |
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| Q |
110 |
tgtctttcctctcaccatttttgtt-cttttctttgctgaaatcataataacaagaacaacaaaaattaggtatagaaatacttatagcat-------aa |
201 |
Q |
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| T |
12791095 |
tgtctttcctctcaccattttttttccttttctttgctgaaatcataaaaacaacaacaacaaaaattaggtatacaaatacttatagcataaaataaaa |
12790996 |
T |
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| Q |
202 |
aataaaataaattattaaagcctatttcaattcataacnnnnnnngtcctcaccaagaaggaaaaacacaatttaaaccatgtaaggaaaaaggatgaaa |
301 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12790995 |
aataaaataaattattgaagcctatttcaattcataacaaaaaaagtcctcaccaagaaggaaaaacacaatttaaaccatgtaaggaaaagggatgaaa |
12790896 |
T |
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| Q |
302 |
atattggccattttaagatctagaaaactataggaaatagaaagggaaaaa |
352 |
Q |
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| T |
12790895 |
atattggccattttaagatctagaaaactataggaaatagaaagggaaaaa |
12790845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 12772335 - 12772189
Alignment:
| Q |
10 |
cacagaacactgataattcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttgcctacttgttgcgttctctatacgcttcatttg |
109 |
Q |
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| T |
12772335 |
cacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtctacttgttgcgttctctatacgcttcatttg |
12772236 |
T |
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| Q |
110 |
tgtctttcctctcaccatttt---tgttcttttctttgctgaaatca |
153 |
Q |
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| T |
12772235 |
tgtctttcctctcaccatttttccttttcttttctttgctaaaatca |
12772189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 28500225 - 28500328
Alignment:
| Q |
27 |
tcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttgcctacttgttgcgttctctatacgcttcatttgtgtctttcctctcacca |
126 |
Q |
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| T |
28500225 |
tcaaatgctttcttcaacaaaccattacgcctctttgagaatgtcacttgtctgcttgtagcattctctatacgcttcatttgtgtctttcctctcacca |
28500324 |
T |
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| Q |
127 |
tttt |
130 |
Q |
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|||| |
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| T |
28500325 |
tttt |
28500328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 28470260 - 28470208
Alignment:
| Q |
26 |
ttcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttgcc |
78 |
Q |
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| T |
28470260 |
ttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgcc |
28470208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 22611571 - 22611518
Alignment:
| Q |
27 |
tcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttgccta |
80 |
Q |
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| T |
22611571 |
tcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgccta |
22611518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 46039653 - 46039703
Alignment:
| Q |
26 |
ttcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttg |
76 |
Q |
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| T |
46039653 |
ttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttg |
46039703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 2115314 - 2115260
Alignment:
| Q |
33 |
gctttcttcaacaaaccatttcttctctttgagaatgttacttgcctacttgttg |
87 |
Q |
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| T |
2115314 |
gctttcttcaacaatccatttcttctttttgagaaagtcacttgcctgcttgttg |
2115260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 5546417 - 5546362
Alignment:
| Q |
21 |
gataattcaaaggctttcttcaacaaaccatttcttctctttgagaatgttacttg |
76 |
Q |
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||||||||| | |||||||||||||||||||||||||| || |||| |||||||| |
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| T |
5546417 |
gataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagttacttg |
5546362 |
T |
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