View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_14 (Length: 349)
Name: NF17535_low_14
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_14 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 10660538 - 10660709
Alignment:
| Q |
178 |
taaatatatttgaaaatgtggcaacaagctaagtcaatgaaacaaattctcaagtagttgaacgcgttgtgcatatgttagaagtggttggtcatgtttg |
277 |
Q |
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| T |
10660538 |
taaatatatttgaaaatgtggcaacaagctaagtcaatgaaacaaattctcaaatagttgaacgcgttgtgcatatgttagaagtgattggtcatgtttg |
10660637 |
T |
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| Q |
278 |
tttcagtgtgaaagtggtgacacgtctaatctgagaggtgttcatggttgtctgattgatagcagtgaaata |
349 |
Q |
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| T |
10660638 |
tttcagtgtgaaagtggtgacacttctaatctgagaggtgttcatggttgtctgattgatagcagtgaaata |
10660709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 10660337 - 10660496
Alignment:
| Q |
7 |
agaactactagaaatatagcttagtcaaatagttggaatgttcatttgcctgagataatagaaataatatacgttgacaggttgatatcatttcccataa |
106 |
Q |
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| T |
10660337 |
agaactactagaaagatagcttagtcaaatagttggaatgttcatttgcctgagataatagaaataatatacgttgaaaggttgatatcatttcccataa |
10660436 |
T |
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| Q |
107 |
aaatgattacaattgttgaacttccactcacttatttgattttattattttagagaaatg |
166 |
Q |
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| T |
10660437 |
aaatgattgcaattgttgaacttccactctcttatttgattttattattttagagaaatg |
10660496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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