View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17535_low_15 (Length: 341)

Name: NF17535_low_15
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17535_low_15
NF17535_low_15
[»] chr7 (9 HSPs)
chr7 (9-330)||(7356350-7356671)
chr7 (99-282)||(7354864-7355049)
chr7 (215-282)||(23608810-23608878)
chr7 (133-282)||(11400244-11400394)
chr7 (238-288)||(20563730-20563780)
chr7 (133-255)||(28469283-28469407)
chr7 (204-282)||(15714639-15714718)
chr7 (240-282)||(23609044-23609086)
chr7 (133-255)||(42731448-42731572)
[»] chr2 (9 HSPs)
chr2 (113-282)||(6846786-6846957)
chr2 (133-276)||(6848009-6848154)
chr2 (173-284)||(3229677-3229789)
chr2 (216-281)||(2940938-2941004)
chr2 (170-292)||(17266390-17266513)
chr2 (178-289)||(16105547-16105659)
chr2 (146-195)||(202644-202694)
chr2 (238-282)||(10841758-10841802)
chr2 (148-195)||(25892484-25892532)
[»] chr5 (7 HSPs)
chr5 (159-288)||(5326053-5326184)
chr5 (150-282)||(15645004-15645138)
chr5 (150-292)||(14848999-14849143)
chr5 (240-282)||(15644726-15644768)
chr5 (173-282)||(42067840-42067950)
chr5 (214-282)||(12904756-12904825)
chr5 (133-255)||(13962893-13963017)
[»] chr6 (3 HSPs)
chr6 (215-286)||(13378523-13378595)
chr6 (160-276)||(10782417-10782534)
chr6 (148-195)||(15115429-15115477)
[»] scaffold0220 (2 HSPs)
scaffold0220 (113-195)||(23321-23404)
scaffold0220 (215-282)||(24704-24772)
[»] chr3 (8 HSPs)
chr3 (210-292)||(30380838-30380921)
chr3 (219-289)||(44654612-44654683)
chr3 (240-281)||(26479309-26479350)
chr3 (133-195)||(40758234-40758297)
chr3 (240-282)||(44654887-44654929)
chr3 (214-282)||(26479072-26479141)
chr3 (215-282)||(1079579-1079647)
chr3 (215-282)||(25108453-25108521)
[»] chr1 (10 HSPs)
chr1 (214-282)||(42267305-42267374)
chr1 (171-276)||(32927266-32927372)
chr1 (148-259)||(22103796-22103909)
chr1 (113-259)||(16970790-16970938)
chr1 (149-255)||(25647913-25648021)
chr1 (173-282)||(32928130-32928240)
chr1 (148-282)||(22103612-22103747)
chr1 (148-195)||(32132394-32132442)
chr1 (155-195)||(32133221-32133261)
chr1 (145-255)||(40435374-40435486)
[»] scaffold0027 (1 HSPs)
scaffold0027 (159-196)||(14092-14129)
[»] chr8 (7 HSPs)
chr8 (240-285)||(22890378-22890423)
chr8 (205-287)||(11291024-11291107)
chr8 (159-196)||(9499899-9499936)
chr8 (149-194)||(11674786-11674831)
chr8 (240-281)||(22890101-22890142)
chr8 (148-196)||(28339249-28339298)
chr8 (218-282)||(31873260-31873325)
[»] scaffold0291 (2 HSPs)
scaffold0291 (146-196)||(6717-6767)
scaffold0291 (215-282)||(6501-6569)
[»] scaffold0008 (1 HSPs)
scaffold0008 (150-195)||(239843-239889)
[»] chr4 (4 HSPs)
chr4 (216-281)||(52298345-52298411)
chr4 (215-282)||(11857894-11857962)
chr4 (215-284)||(11858147-11858218)
chr4 (149-255)||(43155787-43155895)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 7356350 - 7356671
Alignment:
Q  9 gaagaatatggaaggaggagtatattggtctatttgaaatagtctgagatgagaagggtannnnnnnccattcccacgcctattttctaactcacccacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||    
T  7356350 gaagaatatggaaggaggagtatattggtctatttgaaatagtctaagatgagaagggtatttttgtccattcccacgcctattttctaactcacccacc 7356449  T
Q  109 caactggccaatcaacagatccatgtcagcaaattactaacgtggtagtaattaagtgggtgagggaccaaattttaaatgattaaatagttcaggggca 208  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  7356450 caactggccaatcaacagatccacgtcagcaaattactaatgtggtagtaattaagtgggagagggaccaaattttaaatgattaaatagttcaggggta 7356549  T
Q  209 taatatcaggattaacaaatacaaggaccaattttaaatgacccctatttacaggaattaaacacatataaaagtctaaaataacataaaaaattcaaga 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7356550 taatatcaggattaacaaatacagggaccaattttaaatgacccctatttacagggattaaacacatataaaagtctaaaataacataaaaaattcaaga 7356649  T
Q  309 aattcattaacaacatcatcat 330  Q
    ||||||||||||||||||||||    
T  7356650 aattcattaacaacatcatcat 7356671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 7355049 - 7354864
Alignment:
Q  99 ctcacccacccaactggccaatcaacagatccatgtcagcaaattactaacgtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaata 197  Q
    |||||||||||||||||  |||||| ||| ||| |||| |||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||    
T  7355049 ctcacccacccaactggaaaatcaatagagccacgtcaacaaattactaacgtggcaataattaagtggggggagggaccaaattttaaatgattaaata 7354950  T
Q  198 gttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||| ||||||| |||  || ||||||| |||| | ||||||| ||||||||||||||||||| |||||| ||||||| ||||||||    
T  7354949 gtttaggggcaaaatgccacgattaacgaatatagggaccaatttttaaatgacccctatttgcaggaactaaacacgtataaaag 7354864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 23608878 - 23608810
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| || | | ||||||||||||||||    
T  23608878 caggattaagaaatacagggaccaatttttaaatgacccctatttgcaaggactaaacacatataaaag 23608810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 11400244 - 11400394
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaataca 231  Q
    |||| ||||||||| | |||| ||| ||||||||||  ||| ||  |||||||||||||||||||  | ||| |||| || |  ||||||||||||| ||    
T  11400244 gtcatcaaattacttatgtggaagtgattaagtggggagagagaataaattttaaatgattaaattttgcagtggcaaaa-acaaggattaacaaattca 11400342  T
Q  232 aggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
     ||||||| ||||||||||||| ||||| |||  | ||||||||||||||||    
T  11400343 gggaccaaattttaaatgacccatatttgcagagactaaacacatataaaag 11400394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 20563780 - 20563730
Alignment:
Q  238 aattttaaatgacccctatttacaggaattaaacacatataaaagtctaaa 288  Q
    ||||||||||||||||||||| |||| | |||||||||||||||| |||||    
T  20563780 aattttaaatgacccctatttgcagggactaaacacatataaaagcctaaa 20563730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 28469283 - 28469407
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaataca 231  Q
    |||| ||||||| | |||||||||| ||||||||||  ||||||| |||||||||||||||||| | | || ||| | | |  |||||||||| | ||||    
T  28469283 gtcatcaaattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaagggtaaattgccaggattaacgattaca 28469382  T
Q  232 aggaccaa-ttttaaatgaccccta 255  Q
     ||||||| ||||||| ||||||||    
T  28469383 gggaccaatttttaaacgaccccta 28469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 15714639 - 15714718
Alignment:
Q  204 gggcataatatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||| ||| ||||||||||  ||| ||  |||||||||| ||||||||||||||| |||| | ||||||||||||||||    
T  15714639 gggcaaaatgtcaggattaaggaatgcagagaccaatttttaaatgacccctatttgcagggactaaacacatataaaag 15714718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 23609044 - 23609086
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |||||||||| |||||||| |||| ||||||||||||||||||    
T  23609044 ttttaaatgatccctatttgcagggattaaacacatataaaag 23609086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 42731572 - 42731448
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaataca 231  Q
    |||| ||||||| | || ||| ||| ||||||||||  ||||||| |||||||||||||||||| | | |||||| | | |  |||||||| | | ||||    
T  42731572 gtcatcaaattagtgacatggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattaca 42731473  T
Q  232 aggaccaa-ttttaaatgaccccta 255  Q
    |||||||| ||||||| ||||||||    
T  42731472 aggaccaatttttaaacgaccccta 42731448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 6846957 - 6846786
Alignment:
Q  113 tggccaatcaacagatccatgtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataa 211  Q
    |||||||| |||||  |||  ||| |||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||| |||  | ||||| || ||    
T  6846957 tggccaattaacagtgccacatcatcaaattactaacgtggcagtaattaagtgggaagagggacgaaattttaaatgattcaattttgcagggacaaaa 6846858  T
Q  212 tatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |  | |||||||| ||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  6846857 tgcccggattaacgaattcaaggaccaatttttaaatgacccctatttgcagggattaaacacatataaaag 6846786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 6848009 - 6848154
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtggg-tgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaataca 231  Q
    |||| ||||||||| ||||||||||||||||||||| ||| |||| |||||||||||||||||||  ||||||| || ||| ||||||||||| ||| ||    
T  6848009 gtcatcaaattactgacgtggtagtaattaagtggggtgatggacgaaattttaaatgattaaatttttcagggacaaaatgtcaggattaacgaattca 6848108  T
Q  232 aggaccaa-ttttaaatgacccctatttacaggaattaaacacata 276  Q
    | |||||| ||||||||||||| ||||| |||  | ||||||||||    
T  6848109 atgaccaatttttaaatgacccttatttgcagagagtaaacacata 6848154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 3229677 - 3229789
Alignment:
Q  173 ggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaac 271  Q
    ||||||||||||||||||||||||  | ||| |||| || |  ||||||| | |||||||||||||| ||||||||||||| |||||||||| | ||||     
T  3229677 ggaccaaattttaaatgattaaattttacagtggcaaaaaacaaggattagcgaatacaaggaccaaattttaaatgacccttatttacagggactaaaa 3229776  T
Q  272 acatataaaagtc 284  Q
    |||||||||||||    
T  3229777 acatataaaagtc 3229789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 2941004 - 2940938
Alignment:
Q  216 aggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaa 281  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  2941004 aggattaacaaattcagggaccaaattttaaatgacccctatttacagggactaaacacatataaaa 2940938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 17266513 - 17266390
Alignment:
Q  170 gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaatta 268  Q
    |||||||||||||||||||||||||||  |  | ||| | | | ||||||| ||| ||||||  ||||| |||| |||||| ||||||||||||| | ||    
T  17266513 gagggaccaaattttaaatgattaaattttggaagggaaaattgtcaggataaacgaatacattgaccattttttaaatgatccctatttacagggacta 17266414  T
Q  269 aacacatataaaagtctaaaataa 292  Q
    |||||||||||||| | |||||||    
T  17266413 aacacatataaaagccaaaaataa 17266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 16105659 - 16105547
Alignment:
Q  178 aaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacata 276  Q
    |||||||||||||||||||  |    ||||| ||| ||||||||||  ||| || |||||| |||| ||||| |||||||||||||| | ||||||||||    
T  16105659 aaattttaaatgattaaattttgggagggcaaaatgtcaggattaaggaatgcagggaccattttttaaatggcccctatttacagggactaaacacata 16105560  T
Q  277 taaaagtctaaaa 289  Q
    |||||| ||||||    
T  16105559 taaaagcctaaaa 16105547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 202644 - 202694
Alignment:
Q  146 taacgtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaa 195  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  202644 taacgtgggagtaattaagtgggtgtagggacgaaattttaaatgattaaa 202694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 10841758 - 10841802
Alignment:
Q  238 aattttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||    
T  10841758 aattttaaatgacccctatttgcagggactaaacacatataaaag 10841802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 25892532 - 25892484
Alignment:
Q  148 acgtggtagtaattaagt-gggtgagggaccaaattttaaatgattaaa 195  Q
    |||||||||||||||||| ||| ||||||| || |||||||||||||||    
T  25892532 acgtggtagtaattaagtggggagagggacgaatttttaaatgattaaa 25892484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 5326184 - 5326053
Alignment:
Q  159 attaagtgggtg-agggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggacca-attttaaatgacccctat 256  Q
    |||||||||||| ||| ||||||||||||| ||||||||  |  | ||||| |||  |||||||||  ||| || ||||||  |||||||||||||||||    
T  5326184 attaagtgggtggaggaaccaaattttaaaagattaaattttgaaagggcaaaatgccaggattaaggaatgcagggaccattttttaaatgacccctat 5326085  T
Q  257 ttacaggaattaaacacatataaaagtctaaa 288  Q
    || |||| |||||||||||||||||| |||||    
T  5326084 ttgcagggattaaacacatataaaagcctaaa 5326053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 15645004 - 15645138
Alignment:
Q  150 gtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatttt-aaat 247  Q
    |||| ||| |||||||||||| |||||| |||||||||||||||||||  |    ||||| ||| ||||||||||| ||||||   ||||||||| ||||    
T  15645004 gtggcagtgattaagtgggtgtagggacgaaattttaaatgattaaattttgggagggcaaaatgtcaggattaacgaatacataaaccaatttttaaat 15645103  T
Q  248 gacccctatttacaggaattaaacacatataaaag 282  Q
    |||||  |||| |||||| ||||||||||||||||    
T  15645104 gacccacatttgcaggaactaaacacatataaaag 15645138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 14848999 - 14849143
Alignment:
Q  150 gtggtagtaattaagtggg-tgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggacca-attttaaat 247  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||  |    ||||| |||  || ||||||  |||||| ||||||  ||||||||    
T  14848999 gtggcagtgattaagtggggtgagggaccaaattttaaatgattaaattttggtagggcaaaatgccacgattaaggaatacatggaccattttttaaat 14849098  T
Q  248 gacccctatttacaggaattaaacacatataaaagtctaaaataa 292  Q
    || ||||||||| | | | |||||||||||||||| | |||||||    
T  14849099 gatccctatttagaaggactaaacacatataaaagccaaaaataa 14849143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 15644768 - 15644726
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |||||||||||| ||||||||||| | ||||||||||||||||    
T  15644768 ttttaaatgacctctatttacagggactaaacacatataaaag 15644726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 42067840 - 42067950
Alignment:
Q  173 ggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaac 271  Q
    |||| ||||||||||||||||||   | ||||||||   |  |||||||| ||| |||| ||||||| |||||||||||||||| || |||| || ||||    
T  42067840 ggacgaaattttaaatgattaaagtttgcaggggcagtttgccaggattatcaattacagggaccaaattttaaatgacccctaattgcagggatgaaac 42067939  T
Q  272 acatataaaag 282  Q
    |||||| ||||    
T  42067940 acatattaaag 42067950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 12904825 - 12904756
Alignment:
Q  214 tcaggattaacaaatacaaggacca-attttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||| |||||| ||||||  |||||||||| ||||||||| ||| | |||||| |||||||||    
T  12904825 tcaggattaacgaatacagggaccattttttaaatgatccctatttagagggactaaacagatataaaag 12904756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 13963017 - 13962893
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtg-ggtgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaataca 231  Q
    |||| ||||||| | |||||  ||| |||||||| || ||||||| |||||||||||||||||| | | || ||| | | || |||||||| ||| ||||    
T  13963017 gtcatcaaattagtgacgtgacagtgattaagtgaggagagggacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcaattaca 13962918  T
Q  232 aggaccaa-ttttaaatgaccccta 255  Q
     ||||||| ||||||| ||||||||    
T  13962917 gggaccaatttttaaacgaccccta 13962893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 13378595 - 13378523
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaagtcta 286  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||| | |||| |||||| ||||||||    
T  13378595 caggattaacaaatacaaggaccattttttaaatgacccctatttgcagggagtaaatacatattaaagtcta 13378523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 10782534 - 10782417
Alignment:
Q  160 ttaagtgggtgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggacc-aattttaaatgacccctattt 258  Q
    ||||||||| ||| ||| |||||||||||||||||||  | ||||  || ||||| ||||||| ||||| ||   ||| ||||||||||||||| |||||    
T  10782534 ttaagtgggagagagacgaaattttaaatgattaaattttgcaggaacaaaatattaggattagcaaattcattaaccaaattttaaatgacccatattt 10782435  T
Q  259 acaggaattaaacacata 276  Q
     |||| | ||||||||||    
T  10782434 gcagggactaaacacata 10782417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 15115477 - 15115429
Alignment:
Q  148 acgtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaa 195  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  15115477 acgtggtagtaattaagtgggtgtaaggactaaattttaaatgattaaa 15115429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 23404 - 23321
Alignment:
Q  113 tggccaatcaacagatccatgtcagcaaattactaacgtggtagtaattaagt-gggtgagggaccaaattttaaatgattaaa 195  Q
    |||||||| |||||| ||| |||||||||||||| |||||| ||| ||||||| ||| |||  |||||||||||||||||||||    
T  23404 tggccaattaacagagccacgtcagcaaattactgacgtggcagtgattaagtggggggagaaaccaaattttaaatgattaaa 23321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 24704 - 24772
Alignment:
Q  215 caggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| | |||| || ||| |||||| ||||    
T  24704 caggattaacaaatataaggaccaatttttaaatgacccctatatgcagggatgaaaaacatattaaag 24772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 30380921 - 30380838
Alignment:
Q  210 aatatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaagtctaaaataa 292  Q
    |||||||||||||| ||| ||||  ||||||||| ||||||| ||||||||||| || ||||||||||||||||| ||| ||||    
T  30380921 aatatcaggattaagaaaaacaaaaaccaatttttaaatgactcctatttacagaaactaaacacatataaaagtttaatataa 30380838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 44654683 - 44654612
Alignment:
Q  219 attaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaagtctaaaa 289  Q
    ||||| ||||||| |||||| |||| |||||||||||||||||||| | |||||||||||||||| ||||||    
T  44654683 attaagaaatacatggaccattttttaaatgacccctatttacagggactaaacacatataaaagcctaaaa 44654612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 26479309 - 26479350
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaa 281  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  26479309 ttttaaatgacccctatttacagggactaaacacatataaaa 26479350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 40758297 - 40758234
Alignment:
Q  133 gtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaa 195  Q
    |||| ||||||| | |||||||||| ||||||||||  ||||||| ||||||||||||||||||    
T  40758297 gtcatcaaattagtgacgtggtagtgattaagtggggagagggacgaaattttaaatgattaaa 40758234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 44654887 - 44654929
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||||||||||| |||| | ||||||||||||||||    
T  44654887 ttttaaatgacccctatttgcagggactaaacacatataaaag 44654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 26479141 - 26479072
Alignment:
Q  214 tcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||| | |||| |||||| |||| |||| |||||||||| |||| | ||||||||||||||||    
T  26479141 tcaggattaacgattacatggaccattttttaaatcacccctatttgcagggactaaacacatataaaag 26479072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 1079579 - 1079647
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |||||||||| | |||| ||||||||||| |||||||||||| || |||| || |||||||||| ||||    
T  1079579 caggattaacgattacagggaccaatttttaaatgacccctaattgcagggatgaaacacatattaaag 1079647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 25108453 - 25108521
Alignment:
Q  215 caggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |||||||| ||| |||| ||||||| |||||||||||||||| || |||| || |||||||||| ||||    
T  25108453 caggattagcaattacagggaccaaattttaaatgacccctaattgcagggatgaaacacatattaaag 25108521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 42267374 - 42267305
Alignment:
Q  214 tcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||  |||||| ||||||||||| ||||||||||||||| |||| | ||||||||||||||||    
T  42267374 tcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaag 42267305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 32927372 - 32927266
Alignment:
Q  171 agggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaa 269  Q
    |||||||||||||||| |||||||||  |  || | || ||| |||||||||| |||| ||||||| || ||||||||||||| ||||||||||   |||    
T  32927372 agggaccaaattttaactgattaaattttgtagcgacaaaatgtcaggattaataaattcaaggactaatttttaaatgacccatatttacagggtctaa 32927273  T
Q  270 acacata 276  Q
    |||||||    
T  32927272 acacata 32927266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 22103796 - 22103909
Alignment:
Q  148 acgtggtagtaattaagtgg-gtgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatttt-aa 245  Q
    |||||| ||| ||||||||| | ||||||| ||||||||| |||||||||  |    ||||| |||| ||||||||| ||||||| |||||| |||| ||    
T  22103796 acgtggcagtgattaagtggagagagggacgaaattttaagtgattaaattttgacagggcaaaatagcaggattaaaaaatacatggaccattttttaa 22103895  T
Q  246 atgacccctattta 259  Q
    ||||||||||||||    
T  22103896 atgacccctattta 22103909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 16970790 - 16970938
Alignment:
Q  113 tggccaatcaacagatccatgtcagcaaattactaacgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataa 211  Q
    |||||||| || ||| |||  ||| ||||||||| || ||| | | ||||||||||  ||||||| |||||||||||||||||||  | ||| |||| ||    
T  16970790 tggccaatgaagagagccacatcatcaaattactgacatggcaatgattaagtggggagagggacgaaattttaaatgattaaattttacagtggcaaaa 16970889  T
Q  212 tatcaggattaacaaatacaaggacc-aattttaaatgacccctattta 259  Q
     |  | ||||| ||||| |||||||| ||||||||||| ||||||||||    
T  16970890 aacaaagattagcaaattcaaggaccaaattttaaatgtcccctattta 16970938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 25648021 - 25647913
Alignment:
Q  149 cgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaa 246  Q
    ||||| ||| ||||||||||  ||||||| |||||||||||||||||||| | |||||| | | |  |||||||||| | |||| ||||||| |||||||    
T  25648021 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgcaggggtaaattgccaggattaacgattacagggaccaatttttaaa 25647922  T
Q  247 tgaccccta 255  Q
     ||||||||    
T  25647921 cgaccccta 25647913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 32928130 - 32928240
Alignment:
Q  173 ggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatt-ttaaatgacccctatttacaggaattaaac 271  Q
    ||||||||| |||||| |||||||  | ||| |||  |||  ||| |||||||||| || ||||||||| ||||||||||||||||| || | | |||||    
T  32928130 ggaccaaatcttaaataattaaattttgcagtggcgaaatgccagaattaacaaattcatggaccaattcttaaatgacccctatttgcacggactaaac 32928229  T
Q  272 acatataaaag 282  Q
    || ||||||||    
T  32928230 acgtataaaag 32928240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 282
Target Start/End: Complemental strand, 22103747 - 22103612
Alignment:
Q  148 acgtggtagtaattaagtggg-tgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaatttt-aa 245  Q
    |||||| ||| ||||| |||| ||||||||||| |||||| ||||| |||  |  | ||||| |||  || |||||| ||||||| |||||| |||| ||    
T  22103747 acgtggcagtcattaactgggctgagggaccaatttttaagtgattcaattttggaagggcaaaatgccaagattaaaaaatacatggaccattttttaa 22103648  T
Q  246 atgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||||||||| || | ||||||| ||||||||    
T  22103647 atgacccctatttac-gggactaaacacgtataaaag 22103612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 32132442 - 32132394
Alignment:
Q  148 acgtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaa 195  Q
    |||||| |||||||||||||||| |||||| ||||||||| ||||||||    
T  32132442 acgtggcagtaattaagtgggtgtagggacgaaattttaattgattaaa 32132394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 32133221 - 32133261
Alignment:
Q  155 agtaattaagtgggtgagggaccaaattttaaatgattaaa 195  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  32133221 agtaattaagtgggtcaaggacgaaattttaaatgattaaa 32133261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 40435486 - 40435374
Alignment:
Q  145 ctaacgtggtagtaattaagtggg-tgagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttt 242  Q
    ||||||||| ||| ||||| |||| |||| |||  ||||||||||||||||||  | |||| ||| |||   ||||||||| ||||||| |||||| |||    
T  40435486 ctaacgtggcagtgattaattgggctgagagacggaattttaaatgattaaattttacaggtgcaaaatgcaaggattaacgaatacaatgaccaatttt 40435387  T
Q  243 taaatgaccccta 255  Q
    |||| ||||||||    
T  40435386 taaacgaccccta 40435374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 14092 - 14129
Alignment:
Q  159 attaagtgggtgagggaccaaattttaaatgattaaat 196  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14092 attaagtgggggagggaccaaattttaaatgattaaat 14129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 22890378 - 22890423
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaagtct 285  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||    
T  22890378 ttttaaatgacccctatttgcagggactaaacacatataaaagtct 22890423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 11291107 - 11291024
Alignment:
Q  205 ggcataatatcaggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaagtctaa 287  Q
    |||| ||||||||||||||  |||||||| |||| |||| ||||||| |||||||  ||||| ||||||| |||||||| ||||    
T  11291107 ggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataaaagcctaa 11291024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 9499899 - 9499936
Alignment:
Q  159 attaagtgggtgagggaccaaattttaaatgattaaat 196  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  9499899 attaagtgggggagggatcaaattttaaatgattaaat 9499936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 11674831 - 11674786
Alignment:
Q  149 cgtggtagtaattaagtgggtgagggaccaaattttaaatgattaa 194  Q
    ||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  11674831 cgtggcagtgattaagtgggagagggacgaaattttaaatgattaa 11674786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 22890142 - 22890101
Alignment:
Q  240 ttttaaatgacccctatttacaggaattaaacacatataaaa 281  Q
    ||||||||||||||||||||| || | |||||||||||||||    
T  22890142 ttttaaatgacccctatttaccgggactaaacacatataaaa 22890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 28339249 - 28339298
Alignment:
Q  148 acgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaat 196  Q
    ||||| |||||||||| ||||| |||||||||| ||||||||||||||||    
T  28339249 acgtgatagtaattaactgggttgagggaccaatttttaaatgattaaat 28339298  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 31873260 - 31873325
Alignment:
Q  218 gattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||| |||| |||||||| |||| ||||||||| ||||| |||| | ||||||||||||||||    
T  31873260 gattaacgaataaaaggaccattttttaaatgacccatatttgcagggactaaacacatataaaag 31873325  T

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Target: scaffold0291 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 6717 - 6767
Alignment:
Q  146 taacgtggtagtaattaagtgggtgagggaccaaattttaaatgattaaat 196  Q
    |||||||| ||| |||||||||| || | ||||||||||||||||||||||    
T  6717 taacgtggcagtgattaagtgggggaagaaccaaattttaaatgattaaat 6767  T

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Target: scaffold0291; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 6569 - 6501
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||| | || | ||| ||||||||||||    
T  6569 caggattaagaaatacatggaccattttttaaatgacccctatttgctgggactaatcacatataaaag 6501  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 239843 - 239889
Alignment:
Q  150 gtggtagtaattaagtgggtg-agggaccaaattttaaatgattaaa 195  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||    
T  239843 gtggcagtaattaagtgggtgtagggacgaaattttaaatgattaaa 239889  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 52298345 - 52298411
Alignment:
Q  216 aggattaacaaatacaaggaccaa-ttttaaatgacccctatttacaggaattaaacacatataaaa 281  Q
    ||||||||||||| || | ||||| |||||||||||||||||||| | | | |||||||||||||||    
T  52298345 aggattaacaaattcaggaaccaaattttaaatgacccctatttataaggactaaacacatataaaa 52298411  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 11857962 - 11857894
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt-aaatgacccctatttacaggaattaaacacatataaaag 282  Q
    |||||||||  |||||| |||||| |||| |||||||| |||||| |||| | ||||||||||||||||    
T  11857962 caggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataaaag 11857894  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 11858147 - 11858218
Alignment:
Q  215 caggattaacaaatacaaggaccaatttt--aaatgacccctatttacaggaattaaacacatataaaagtc 284  Q
    |||||||||  |||||| |||||||||||  ||||||| ||||||| |||| | |||| |||||||||||||    
T  11858147 caggattaaggaatacagggaccaattttttaaatgactcctatttgcagggactaaatacatataaaagtc 11858218  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 43155787 - 43155895
Alignment:
Q  149 cgtggtagtaattaagtgggt-gagggaccaaattttaaatgattaaatagttcaggggcataatatcaggattaacaaatacaaggaccaa-ttttaaa 246  Q
    ||||| ||| ||||||||||  ||||||| |||||||||||||||||||| | |||||  | | |  |||||||||| | |||| ||||||| |||||||    
T  43155787 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaataatgcagggataaattgccaggattaacgattacagggaccaatttttaaa 43155886  T
Q  247 tgaccccta 255  Q
     ||||||||    
T  43155887 cgaccccta 43155895  T

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