View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_low_16 (Length: 338)
Name: NF17535_low_16
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 42325900 - 42325579
Alignment:
| Q |
1 |
gaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325900 |
gaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgc |
42325801 |
T |
|
| Q |
101 |
atgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcctcaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42325800 |
atgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactcc-tttcctcaacaa |
42325702 |
T |
|
| Q |
201 |
gaagagttatctgagttgtactcttaagtttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcatt |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325701 |
gaagaattatctgagttgtactcttaagtttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcatt |
42325602 |
T |
|
| Q |
301 |
gttggaagagtgataggagaagt |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42325601 |
gttggaagagtgataggagaagt |
42325579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University