View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17535_low_17 (Length: 336)

Name: NF17535_low_17
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17535_low_17
NF17535_low_17
[»] chr8 (2 HSPs)
chr8 (16-184)||(34862952-34863120)
chr8 (185-321)||(34862769-34862906)
[»] chr7 (4 HSPs)
chr7 (90-167)||(96784-96861)
chr7 (246-321)||(4480381-4480456)
chr7 (283-321)||(1479609-1479647)
chr7 (90-158)||(28613162-28613230)
[»] scaffold0130 (1 HSPs)
scaffold0130 (258-321)||(23459-23520)
[»] chr1 (2 HSPs)
chr1 (106-158)||(14443975-14444027)
chr1 (106-158)||(29175644-29175696)
[»] chr4 (1 HSPs)
chr4 (107-158)||(21774196-21774247)
[»] chr6 (1 HSPs)
chr6 (120-158)||(19263165-19263203)
[»] chr5 (1 HSPs)
chr5 (97-157)||(40877051-40877111)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 34863120 - 34862952
Alignment:
Q  16 tctctctctctactgtgtttttagttttctgttgttccatccaatttaaaaaggtattcccttttctgtgatcccaatgttgtcaatcaaggattgcaga 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34863120 tctctctctttactgtgtttttagttttctgttgttccatccaatttaaaaaggtattcccttttctgtgatcccaatgttgtcaatcaaggatagcaga 34863021  T
Q  116 aaacagcagattgttaaaattccgctctgcaatagtgttatagtgctactattttgacaacattttgta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34863020 aaacagcagattgttaaaattccgctctgcaatagtgttatagtgctactattttgacaacattttgta 34862952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 34862906 - 34862769
Alignment:
Q  185 tacgctatagtgtggaatagcaccactatagtttctatttaacaacactgcgatccaaagcttaatca-tatgctgttgtttggaaaatgacattttgat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  34862906 tacgctatagtgtggaatagcaccactatagtttctatttaacaacactgcgatccaaagcttaatcattatgccgttgtttggaaaatgacattttgat 34862807  T
Q  284 caatataaataagagattgcaagaaagtgagtcaattg 321  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34862806 caatataaataagagattgcaagaaagtgagtcaattg 34862769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 96784 - 96861
Alignment:
Q  90 caatgttgtcaatcaaggattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttatagtgctactat 167  Q
    |||| ||||||||||||||| |||||||| |||  |||||||||||||||||  ||||||||| ||||| ||||||||    
T  96784 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactat 96861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 4480381 - 4480456
Alignment:
Q  246 ttaatcatatgctgttgtttggaaaatgacattttgatcaatataaataagagattgcaagaaagtgagtcaattg 321  Q
    ||||||| ||| |||||  |||||||||||||||| ||||||| |||| ||||||||||||||| ||||| |||||    
T  4480381 ttaatcacatgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaagaaattgagtaaattg 4480456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 1479647 - 1479609
Alignment:
Q  283 tcaatataaataagagattgcaagaaagtgagtcaattg 321  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  1479647 tcaatacaaatgagagattgcaagaaagtgagtcaattg 1479609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 28613162 - 28613230
Alignment:
Q  90 caatgttgtcaatcaaggattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttatag 158  Q
    ||||||||||||||  |||| |  |||||  ||||||||||||||||||||| ||||| |||| |||||    
T  28613162 caatgttgtcaatcgcggatagtggaaaatggcagattgttaaaattccgctatgcaacagtgctatag 28613230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 23520 - 23459
Alignment:
Q  258 tgttgtttggaaaatgacattttgatcaatataaataagagattgcaagaaagtgagtcaattg 321  Q
    |||||| |||||||||||||||||||||| | | ||  ||||||||||||||||||||||||||    
T  23520 tgttgtatggaaaatgacattttgatcaacacagat--gagattgcaagaaagtgagtcaattg 23459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 14444027 - 14443975
Alignment:
Q  106 ggattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttatag 158  Q
    |||| |||||||||||| |||| |||||||||| || ||||||||||||||||    
T  14444027 ggatagcagaaaacagcggattattaaaattccactatgcaatagtgttatag 14443975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 29175696 - 29175644
Alignment:
Q  106 ggattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttatag 158  Q
    |||||||| |||||||||| |  || |||||||||||||||| ||||||||||    
T  29175696 ggattgcaaaaaacagcagttcattcaaattccgctctgcaacagtgttatag 29175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 21774247 - 21774196
Alignment:
Q  107 gattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttatag 158  Q
    ||||||| |||||||| |||| ||||||||||||| || |||||||||||||    
T  21774247 gattgcaaaaaacagcggattattaaaattccgctatgaaatagtgttatag 21774196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 19263165 - 19263203
Alignment:
Q  120 agcagattgttaaaattccgctctgcaatagtgttatag 158  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  19263165 agcagattgttaaaattccgctatgcaatagtgctatag 19263203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 40877051 - 40877111
Alignment:
Q  97 gtcaatcaaggattgcagaaaacagcagattgttaaaattccgctctgcaatagtgttata 157  Q
    |||||||||||||||||||||| || || ||||| |||||| ||| ||| |||||| ||||    
T  40877051 gtcaatcaaggattgcagaaaatagtagtttgttcaaattctgctttgctatagtgctata 40877111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University