View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_low_19 (Length: 319)
Name: NF17535_low_19
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 46008972 - 46009149
Alignment:
| Q |
10 |
catcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46008972 |
catcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaa |
46009071 |
T |
|
| Q |
110 |
tgtcccaaatcttctccatctcaaaacacacccttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009072 |
tgtcccaaatcttctccatctcaaaacacacctttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
46009149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 46009211 - 46009305
Alignment:
| Q |
224 |
gaatattttaaattaagagttgcttgtnnnnnnnnttcaaacacaggtcaatcatgatgtccaagaagcaaaaaacatgtcacagttatttagtac |
319 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009211 |
gaatattttaaattaagagttgcttgtaaaaaaa-ttcaaacacaggtcaatgatgatgtccaagaagcaaaaaacatgtcacagttatttagtac |
46009305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University