View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_2 (Length: 548)
Name: NF17535_low_2
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 134 - 534
Target Start/End: Complemental strand, 23355345 - 23354945
Alignment:
| Q |
134 |
atgacactcagcctacaaagtatctcttatgtttcaggtttgattgtttctgcatcaacaatggttatttctacaattcaacaaacaaaaactgtatgga |
233 |
Q |
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| T |
23355345 |
atgacactcagcctacaaagtacctcttatgtttcaggtttgattgtttctgcatcaacaatggttatttctacaattcaacaaacaaaaactgtatgga |
23355246 |
T |
|
| Q |
234 |
tggaaaacctttgagtcgttcaattttcttaaaacattttgggaaaggatttgtcaaagaaggtgttacttttgttatttctgatgatcttattgtcaag |
333 |
Q |
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| T |
23355245 |
tggaaaacctttgagtcgttcaatttttttaaaacattttgggaaaggatttgtcaaagaaggtgttacttttgttatttctgatgatcttattgtcaag |
23355146 |
T |
|
| Q |
334 |
ccgaactcagtggaattcaccggccttagtatgcttcagaattatggaataaaagacataagttcagtaaaggaaatgactctcaacgtcactaaagaaa |
433 |
Q |
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| T |
23355145 |
ccgaactcagtggaattcaccggccttagtatgcttcagaattatggaataaaagacataagttcagtaaatcaaatgactctcaacgtcactaaagaaa |
23355046 |
T |
|
| Q |
434 |
aggttatattttatagttgtgttcgcttatttgttgcttgctttacaatacatcgctttttaaattttgtcatcaattcatttttgaaatattagtatta |
533 |
Q |
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| T |
23355045 |
aggttatattttatagttgtgttcgcttatttgtttcttgctttacaatacatcgctttttaaattttgtcatcaattcatttttgaaatattagtatta |
23354946 |
T |
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| Q |
534 |
t |
534 |
Q |
| |
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| T |
23354945 |
t |
23354945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 200 - 472
Target Start/End: Complemental strand, 23347825 - 23347555
Alignment:
| Q |
200 |
atttctacaattcaacaaacaaaaactgtatggatggaaaacctttgagtcgttcaattttcttaaaacattttgggaaaggatttgtcaaagaaggtgt |
299 |
Q |
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| T |
23347825 |
atttatacacttctacagacaaaaactgtgtgtatggaaaacctttgagtcgttcaactttcttgacacattttgggagaggatttgttaaagaacgtgc |
23347726 |
T |
|
| Q |
300 |
tacttttgttatttctgatgatcttattgtcaagccgaactcagtggaattcaccggccttagtatgcttcagaattatggaataaaagacataagttca |
399 |
Q |
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| T |
23347725 |
agcttttgttattactgatgatctaattgtcatgccgaactca---gaattcacagggctaagcatgcttcagaattctggaataaaaaacacaagttca |
23347629 |
T |
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| Q |
400 |
gtaaaggaaatgactctcaacgtcactaaagaaaaggttat-attttatagttgtgttcgcttatttgttgctt |
472 |
Q |
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| T |
23347628 |
ataacggaaatgactataaacctcactaaggaaaaggttataaatttatagctttgttccctaatttgttgctt |
23347555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 23355490 - 23355377
Alignment:
| Q |
20 |
gttaccataggttgtttgaacgcattttatcaaagtgtggtagatctcgacgaagagtgtatgcagactgagacaagcaaagaaatgatattacacccaa |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23355490 |
gttaccataggttgtttgaactcattttatcaaagtgtggtagatctcgacgaagagtgtatgcagactgagacaagcaaagaaatgatattacacccaa |
23355391 |
T |
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| Q |
120 |
ataactcttctgaa |
133 |
Q |
| |
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| T |
23355390 |
agaactcttctgaa |
23355377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 23348038 - 23347923
Alignment:
| Q |
18 |
cagttaccataggttgtttgaacgcattttatcaaagtgtggtagatctcgacgaagagtgtatgcagactgagacaagcaaagaaatgatattacaccc |
117 |
Q |
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| T |
23348038 |
cagttagcattggttgtctgaacaaactttatcaaggtgcaatagatctcgatgaagaatatatgcagactgagacaagcaaagaaatgatattgcaccc |
23347939 |
T |
|
| Q |
118 |
aaataactcttctgaa |
133 |
Q |
| |
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|| |||||||||||| |
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| T |
23347938 |
gaagaactcttctgaa |
23347923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Complemental strand, 1157026 - 1156967
Alignment:
| Q |
379 |
ggaataaaagacataagttcagtaaaggaaatgactctcaacgtcactaaagaaaaggtt |
438 |
Q |
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||||| ||| ||| |||||||||||| ||||||||| |||| |||||||| ||||||||| |
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| T |
1157026 |
ggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaaaggtt |
1156967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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