View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17535_low_22 (Length: 309)

Name: NF17535_low_22
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17535_low_22
NF17535_low_22
[»] chr5 (19 HSPs)
chr5 (130-309)||(42490666-42490845)
chr5 (15-130)||(42490519-42490634)
chr5 (38-124)||(27903349-27903435)
chr5 (26-89)||(8081214-8081276)
chr5 (36-123)||(11682273-11682360)
chr5 (26-89)||(41666857-41666919)
chr5 (26-76)||(95378-95428)
chr5 (26-120)||(6415829-6415923)
chr5 (26-76)||(24531756-24531806)
chr5 (271-309)||(42489560-42489598)
chr5 (26-89)||(18885384-18885446)
chr5 (26-89)||(24269970-24270032)
chr5 (26-89)||(24346601-24346663)
chr5 (26-92)||(6919291-6919356)
chr5 (26-76)||(15590095-15590145)
chr5 (26-76)||(20510754-20510804)
chr5 (26-76)||(25258178-25258228)
chr5 (26-76)||(25321968-25322018)
chr5 (26-76)||(33337350-33337400)
[»] chr1 (11 HSPs)
chr1 (26-124)||(12325361-12325459)
chr1 (26-124)||(12376502-12376600)
chr1 (20-124)||(49142867-49142972)
chr1 (26-77)||(27413504-27413555)
chr1 (26-89)||(25713315-25713377)
chr1 (26-90)||(17412489-17412552)
chr1 (26-89)||(4112640-4112702)
chr1 (26-89)||(4112871-4112933)
chr1 (26-76)||(369789-369839)
chr1 (26-78)||(26229723-26229775)
chr1 (26-90)||(35892213-35892276)
[»] chr8 (17 HSPs)
chr8 (26-125)||(10615551-10615650)
chr8 (26-90)||(39052636-39052699)
chr8 (27-114)||(10615014-10615101)
chr8 (26-89)||(39052794-39052856)
chr8 (26-124)||(31079627-31079725)
chr8 (26-96)||(37868165-37868235)
chr8 (26-95)||(8084284-8084352)
chr8 (26-82)||(37867939-37867995)
chr8 (26-89)||(11232294-11232356)
chr8 (26-76)||(3157121-3157171)
chr8 (26-76)||(3157436-3157486)
chr8 (36-101)||(8849349-8849414)
chr8 (26-89)||(20094660-20094722)
chr8 (26-77)||(42049562-42049613)
chr8 (26-76)||(20301418-20301468)
chr8 (26-76)||(21088050-21088100)
chr8 (26-71)||(18004211-18004256)
[»] chr4 (17 HSPs)
chr4 (54-125)||(33108056-33108127)
chr4 (26-89)||(5398575-5398637)
chr4 (26-76)||(50543442-50543492)
chr4 (41-124)||(32002493-32002576)
chr4 (26-124)||(40717271-40717368)
chr4 (26-95)||(1215912-1215981)
chr4 (31-124)||(7926484-7926577)
chr4 (25-81)||(33107790-33107846)
chr4 (26-89)||(27634181-27634243)
chr4 (26-77)||(52559726-52559777)
chr4 (26-76)||(5398323-5398372)
chr4 (26-76)||(28245638-28245688)
chr4 (26-76)||(35796854-35796904)
chr4 (40-124)||(12005534-12005619)
chr4 (38-83)||(25324139-25324184)
chr4 (67-119)||(11053951-11054003)
chr4 (76-124)||(20726889-20726937)
[»] chr6 (11 HSPs)
chr6 (26-114)||(20830670-20830758)
chr6 (58-125)||(34846831-34846897)
chr6 (26-89)||(4868677-4868739)
chr6 (26-89)||(13353358-13353420)
chr6 (26-89)||(33796483-33796545)
chr6 (26-89)||(17147760-17147822)
chr6 (26-89)||(30256734-30256797)
chr6 (26-76)||(6400732-6400782)
chr6 (26-124)||(12330009-12330106)
chr6 (18-89)||(3680160-3680230)
chr6 (26-90)||(31961100-31961163)
[»] chr3 (10 HSPs)
chr3 (26-101)||(13574772-13574847)
chr3 (26-89)||(35038294-35038356)
chr3 (26-89)||(4155481-4155543)
chr3 (26-89)||(34992763-34992825)
chr3 (26-76)||(20327726-20327776)
chr3 (55-124)||(45828196-45828265)
chr3 (26-89)||(19954318-19954379)
chr3 (26-89)||(31317388-31317450)
chr3 (26-76)||(16239749-16239799)
chr3 (26-76)||(29215701-29215750)
[»] chr2 (15 HSPs)
chr2 (26-125)||(33381016-33381115)
chr2 (26-97)||(41069264-41069335)
chr2 (26-87)||(16533469-16533529)
chr2 (26-89)||(2029926-2029988)
chr2 (26-97)||(2464790-2464861)
chr2 (26-89)||(5711539-5711601)
chr2 (26-77)||(17525210-17525261)
chr2 (26-76)||(14466287-14466337)
chr2 (26-82)||(42895405-42895461)
chr2 (26-89)||(16419424-16419486)
chr2 (26-89)||(33606154-33606216)
chr2 (27-82)||(36063304-36063359)
chr2 (26-89)||(37812368-37812430)
chr2 (26-89)||(44404026-44404088)
chr2 (26-82)||(13250128-13250184)
[»] scaffold0041 (1 HSPs)
scaffold0041 (26-124)||(67407-67504)
[»] chr7 (19 HSPs)
chr7 (38-124)||(2938137-2938222)
chr7 (26-124)||(40898780-40898877)
chr7 (26-90)||(25620293-25620356)
chr7 (26-89)||(1596750-1596812)
chr7 (26-76)||(2315138-2315188)
chr7 (26-76)||(21861451-21861501)
chr7 (26-76)||(36277103-36277153)
chr7 (26-89)||(3519825-3519887)
chr7 (73-124)||(10420715-10420766)
chr7 (26-89)||(29469762-29469824)
chr7 (26-89)||(33834348-33834410)
chr7 (26-89)||(40746133-40746194)
chr7 (26-76)||(48661431-48661482)
chr7 (26-124)||(1936177-1936275)
chr7 (26-64)||(4886486-4886524)
chr7 (26-76)||(22574758-22574808)
chr7 (26-76)||(31892309-31892359)
chr7 (27-76)||(21821962-21822011)
chr7 (47-111)||(21109231-21109295)
[»] scaffold0519 (1 HSPs)
scaffold0519 (26-89)||(2073-2135)
[»] scaffold0692 (1 HSPs)
scaffold0692 (26-74)||(5633-5681)
[»] scaffold0048 (1 HSPs)
scaffold0048 (26-90)||(81998-82061)
[»] scaffold0459 (1 HSPs)
scaffold0459 (26-89)||(13255-13317)
[»] scaffold0366 (2 HSPs)
scaffold0366 (26-89)||(10896-10958)
scaffold0366 (26-89)||(14562-14624)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 130 - 309
Target Start/End: Original strand, 42490666 - 42490845
Alignment:
Q  130 agcatggtcacaagaccaactatctgactaattcaacaataacaaaatgaaggataaatgtctaagacttctcccggaaaagataaaaccagtcagaggt 229  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||    
T  42490666 agcatagtcacaagaccaactatctgtctaattcaacaataacaaaatgaaggataaatgtcctagacttctcccctaaaagataaaaccagtcagaggt 42490765  T
Q  230 atgccttccattaacgttgcatcttcatatggattgaacaatgagaatggaatatcacttctgatttctgactattatgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42490766 atgccttccattaacgttgcatcttcatatggattgaacaatgagaatggaatatcacttctgatttctgactattatgc 42490845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 42490519 - 42490634
Alignment:
Q  15 actatccaccattatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtg 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  42490519 actatccaccattatgtccacgaaccaagtcaaatagtattggtcgtgagagggtgtgttaaagagtcatacatcaaacaaaatatgacataaacatatg 42490618  T
Q  115 cttataagtgaaaata 130  Q
     |||||||||||||||    
T  42490619 tttataagtgaaaata 42490634  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 27903349 - 27903435
Alignment:
Q  38 accaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||| |||||| ||||  ||| |||||||||||||||||||  |||||  | |||||||||||| |||||||| |||||||||    
T  27903349 accaagcccaatagtgttggatgtgggagggtgtgttaaagagtctcacatccgataaaatatgacatgaacatgtgtttataagtg 27903435  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 8081276 - 8081214
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  8081276 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 8081214  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 11682360 - 11682273
Alignment:
Q  36 gaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagt 123  Q
    |||||||| | |||||| |||||||||||| ||| ||||||||||||  |||||| |||||||||||  | || ||||| ||||||||    
T  11682360 gaaccaagtccaatagtgttggtcgtgagacggtatgttaaagagtctcacatcagacaaaatatgatctgaaaatgtgtttataagt 11682273  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 41666919 - 41666857
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  41666919 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 41666857  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 95428 - 95378
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  95428 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 95378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 6415829 - 6415923
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttata 120  Q
    |||||||||||||||||||| |||||| ||||| |||||   |||||||||||| | | ||| || |||||| ||| ||| |||||||| |||||    
T  6415829 ttatgtccacgaaccaagcccaatagtgttggttgtgaggttgtgtgttaaagaattccacaccagacaaaagatggcatgaacatgtgtttata 6415923  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 24531756 - 24531806
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  24531756 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 24531806  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 42489560 - 42489598
Alignment:
Q  271 tgagaatggaatatcacttctgatttctgactattatgc 309  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42489560 tgagaatggaatataacttctgatttctgactattatgc 42489598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 18885384 - 18885446
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||| | |||||||||| ||||||  |||||||||||||||||||| |||||||| |||||    
T  18885384 ttatgtctatgaaccaagcccaatagtgctggtcgtgagagggtgtgtt-aagagtcccacatc 18885446  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 24270032 - 24269970
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||  ||||||  |||||||||| ||||||||| |||||||| |||||    
T  24270032 ttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 24269970  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 24346663 - 24346601
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||  ||||||  |||||||||| ||||||||| |||||||| |||||    
T  24346663 ttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 24346601  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 6919356 - 6919291
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaa 92  Q
    |||||||||||||||||||| ||||||  |||||||||  | ||||||| |||||||| ||||||||    
T  6919356 ttatgtccacgaaccaagcccaatagtgctggtcgtgatggtgtgtgtt-aagagtcccacatcaaa 6919291  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 15590095 - 15590145
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||||||||||| || ||||||  |||||||||| |||||||||||    
T  15590095 ttatgtccacgaaccaaacccaatagtgctggtcgtgagggggtgtgttaa 15590145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 20510804 - 20510754
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  || ||||||| |||||||||||    
T  20510804 ttatgtccacgaaccaagcccaatagtgatgatcgtgagggggtgtgttaa 20510754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 25258228 - 25258178
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||||||||||||||||||| |  ||||| |||| |||||||||||    
T  25258228 ttatgtccacgaaccaagccaaataatgctggtcatgagggggtgtgttaa 25258178  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 25322018 - 25321968
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||||||||||||||||||| |  ||||| |||| |||||||||||    
T  25322018 ttatgtccacgaaccaagccaaataatgctggtcatgagggggtgtgttaa 25321968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 33337400 - 33337350
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  ||||| |||| |||||||||||    
T  33337400 ttatgtccacgaaccaagcccaatagtgctggtcatgagggggtgtgttaa 33337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 12325459 - 12325361
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||  |||||||||||||  ||||||||||||||| |||||||||    
T  12325459 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtgttaaagagtctcacatcaaacaaaagctgacataaacatgtgtttataagtg 12325361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 12376600 - 12376502
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||  ||||||||||||| ||||||| |||||||| |||||||||    
T  12376600 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggtgtgtgttaaagagtctcacatcaaacaaaagatgacatgaacatgtgtttataagtg 12376502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 49142867 - 49142972
Alignment:
Q  20 ccaccattatgtccacgaaccaagccaaatagtattggtcgtgagagg-gtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgctta 118  Q
    ||||||||||||||||||||||| || |||||  |||||| |||| || |||| ||||||||||| |||||| |||||||||| ||| |||||||| |||    
T  49142867 ccaccattatgtccacgaaccaaacccaataggtttggtcatgaggggtgtgtattaaagagtcccacatcagacaaaatatggcatgaacatgtgttta 49142966  T
Q  119 taagtg 124  Q
    ||||||    
T  49142967 taagtg 49142972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 27413504 - 27413555
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaa 77  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  27413504 ttatgtccacgaatcaagcccaatagtgttggtcgtgagagggtgtgttaaa 27413555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 25713315 - 25713377
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| |||||| ||||||||||| ||| ||||| |||||||| |||||    
T  25713315 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggggggtgtt-aagagtcccacatc 25713377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 17412489 - 17412552
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    ||||||||||||| |||||| |||||| ||||||||||  |||||||||||| ||||| ||||||    
T  17412489 ttatgtccacgaatcaagcccaatagtgttggtcgtgatggggtgtgttaaa-agtcccacatca 17412552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 4112702 - 4112640
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||| |||||||||||| |||||| ||||||||||| ||| ||||| |||||||| |||||    
T  4112702 ttatgtcaacgaaccaagcccaatagtgttggtcgtgagggggggtgtt-aagagtcccacatc 4112640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 4112933 - 4112871
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||  ||||||  |||||||||| ||||||||| |||||||| |||||    
T  4112933 ttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 4112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 369789 - 369839
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| || ||||||||    
T  369789 ttatgtccacgaaccaagcccaatagtgctggtcgtgaggggatgtgttaa 369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 26229723 - 26229775
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaag 78  Q
    |||||||||||||||||||  |||||  |||||||||| | ||||||||||||    
T  26229723 ttatgtccacgaaccaagcttaatagcgttggtcgtgaaatggtgtgttaaag 26229775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 35892213 - 35892276
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    |||||||||||||  ||||| ||| ||  |||||||||||||||||||| |||||||| ||||||    
T  35892213 ttatgtccacgaattaagcccaattgtgctggtcgtgagagggtgtgtt-aagagtcccacatca 35892276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 10615551 - 10615650
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtga 125  Q
    |||| ||||||||||||| | ||||||  | |||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  10615551 ttatctccacgaaccaagtccaatagtgctagtcgtgagggtgtgtgttaaagagtcctacatcgaacaaaatatgacatgaacatgtgtttataagtga 10615650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 39052699 - 39052636
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||| ||||||    
T  39052699 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgtt-aagagtcccacatca 39052636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 10615101 - 10615014
Alignment:
Q  27 tatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtg 114  Q
    ||||| ||||||||||| | |||||| ||||| ||||| | |||||||||||||||| |||||  | |||||||||||| ||||||||    
T  10615101 tatgttcacgaaccaagtccaatagtgttggttgtgagggtgtgtgttaaagagtcccacatcggataaaatatgacatgaacatgtg 10615014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 39052856 - 39052794
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||| |||||    
T  39052856 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgtt-aagagtcccacatc 39052794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 31079725 - 31079627
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||| |||||   ||||||||||  ||||||||||||||||| |||||    |||||||| | | |||||||| |||||||||    
T  31079725 ttatgtccacgaaccaagcccaatagggatggtcgtgaggaggtgtgttaaagagtcccacatcgggtaaaatatggcttgaacatgtgtttataagtg 31079627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 37868235 - 37868165
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaa 96  Q
    |||||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||  |||||| |||||    
T  37868235 ttatgtccacgagccaagcccaatagtgttggtcgtgagggtgtgtgttaaagagtctaacatcagacaaa 37868165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 8084284 - 8084352
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaa 95  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| ||||| |||||    
T  8084284 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatcgaacaa 8084352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 37867995 - 37867939
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtc 82  Q
    |||||||||||||||||| | |||||| ||||||||||| | |||||||||||||||    
T  37867995 ttatgtccacgaaccaaggccaatagtgttggtcgtgagggtgtgtgttaaagagtc 37867939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 11232356 - 11232294
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  11232356 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 11232294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 3157171 - 3157121
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  3157171 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 3157121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 3157486 - 3157436
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  3157486 ttatgtccacgaaccaagcccaatagtgctggtcgtgagtgggtgtgttaa 3157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 8849349 - 8849414
Alignment:
Q  36 gaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatg 101  Q
    ||||||| || |||||| ||||||||||| |||||||||||||||||  | |||| ||||||||||    
T  8849349 gaaccaaacccaatagtgttggtcgtgagggggtgtgttaaagagtctcaaatcagacaaaatatg 8849414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 20094722 - 20094660
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||| ||||| |||||||| |||||    
T  20094722 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggcgtgtt-aagagtcccacatc 20094660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 42049613 - 42049562
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaa 77  Q
    |||||||||||||||||| | |||||| ||| ||||||| ||||||||||||    
T  42049613 ttatgtccacgaaccaagtccaatagtgttgctcgtgagggggtgtgttaaa 42049562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 20301418 - 20301468
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||| |||||||||||| ||||||  |||||||||| |||||||||||    
T  20301418 ttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 20301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 21088050 - 21088100
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||| |||||||||||| ||||||  |||||||||| |||||||||||    
T  21088050 ttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 21088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 18004256 - 18004211
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgt 71  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||    
T  18004256 ttatgtccacgaaccaagcctaatagtgctggtcgtgagggggtgt 18004211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 33108056 - 33108127
Alignment:
Q  54 ttggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtga 125  Q
    |||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  33108056 ttggtcgtgagatggtgtattaaagagtcttacatcgaacaaaatatgacataaacatgtgtttataagtga 33108127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 5398637 - 5398575
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||| |||||||| |||||    
T  5398637 ttatgtccacgaaccaagccaaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 5398575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 50543492 - 50543442
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  50543492 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgttaa 50543442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 32002493 - 32002576
Alignment:
Q  41 aagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    ||||| ||||| ||||||||| ||  ||||||||||||||||| ||||  ||||||||||| ||| ||||| || |||||||||    
T  32002493 aagcccaataggattggtcgtaaggaggtgtgttaaagagtcccacattgaacaaaatatggcatgaacatatgtttataagtg 32002576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 40717368 - 40717271
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||| ||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||| ||| || ||||| | |  ||||| |||||||||    
T  40717368 ttatgtccacaaaccaagcctaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatcagacagaacatgacctgacaatgtgtttataagtg 40717271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 1215912 - 1215981
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaa 95  Q
    |||||||||||||||||| | |||||| |||||| | || | |||||||||||||||| | |||||||||    
T  1215912 ttatgtccacgaaccaagtccaatagtgttggtcataagggagtgtgttaaagagtcccaaatcaaacaa 1215981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 7926484 - 7926577
Alignment:
Q  31 tccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    ||||||||||||||| |||| |  | |||||||| |||||||||||||||||| |||||  |||||| ||| | | |||||||| || ||||||    
T  7926484 tccacgaaccaagcccaataatggtagtcgtgagggggtgtgttaaagagtcccacatcggacaaaagatggcctgaacatgtgtttgtaagtg 7926577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 33107790 - 33107846
Alignment:
Q  25 attatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagt 81  Q
    ||||||||||||||||||| | ||| || |||||||||||  |||||||||||||||    
T  33107790 attatgtccacgaaccaagtccaatggtcttggtcgtgaggaggtgtgttaaagagt 33107846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 27634243 - 27634181
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||| ||||| |||||||| |||||    
T  27634243 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtgtt-aagagtcccacatc 27634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 52559726 - 52559777
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaa 77  Q
    |||||||||||||||||||| ||||||  |||| ||||| ||||||||||||    
T  52559726 ttatgtccacgaaccaagcccaatagtgctggttgtgagggggtgtgttaaa 52559777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 5398372 - 5398323
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  5398372 ttatgtccacgaaccaagcccaataatgttggtcgtgag-gggtgtgttaa 5398323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 28245688 - 28245638
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||  |||||||||||    
T  28245688 ttatgtccacgaaccaagcccaatagtgctggtcgtgatggggtgtgttaa 28245638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 35796904 - 35796854
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||| ||||||||||||||| ||||||  |||||||||| |||||||||||    
T  35796904 ttatctccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 35796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 12005619 - 12005534
Alignment:
Q  40 caagccaaatagtattggtcgtgagagg-gtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||| ||||||  |||||||||| || |||||||||||||||| |||||  |||||||||| ||| ||||| || | |||||||    
T  12005619 caagcccaatagtgctggtcgtgaggggtgtgtgttaaagagtcccacatcggacaaaatatggcatgaacatttgttaataagtg 12005534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 25324184 - 25324139
Alignment:
Q  38 accaagccaaatagtattggtcgtgagagggtgtgttaaagagtcc 83  Q
    |||||||| |||||||||||  ||||| ||||||||||||||||||    
T  25324184 accaagcccaatagtattgggtgtgagggggtgtgttaaagagtcc 25324139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 11054003 - 11053951
Alignment:
Q  67 ggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttat 119  Q
    |||||||||||||||| ||||||| | || | ||||||| |||||||||||||    
T  11054003 ggtgtgttaaagagtcttacatcagagaagagatgacatgaacatgtgcttat 11053951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 20726937 - 20726889
Alignment:
Q  76 aagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||  ||||||||||||| ||||||| |||||||| |||||||||    
T  20726937 aagagtctcacatcaaacaaaagatgacatgaacatgtgtttataagtg 20726889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 20830670 - 20830758
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtg 114  Q
    |||| ||||||||||||||| |||| || |||||||||||| || |||||||||||| ||||||  |||||| ||||  ||||||||||    
T  20830670 ttatttccacgaaccaagcccaataatactggtcgtgagagtgtatgttaaagagtcttacatcggacaaaagatgatctaaacatgtg 20830758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 34846897 - 34846831
Alignment:
Q  58 tcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtga 125  Q
    |||||||||||||||||||| |||| |  ||| |||||||||||||||||||||||| ||||||||||    
T  34846897 tcgtgagagggtgtgttaaa-agtcttgtatcgaacaaaatatgacataaacatgtgtttataagtga 34846831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 4868739 - 4868677
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  4868739 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 4868677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 13353358 - 13353420
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  13353358 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 13353420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 33796483 - 33796545
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  33796483 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 33796545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 17147822 - 17147760
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||| ||||| ||||||||| |||||||| |||||    
T  17147822 ttatgtccacgaaccaagcccaatagtgctggttgtgagggggtgtgtt-aagagtcccacatc 17147760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 30256734 - 30256797
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||| ||||| || ||| ||||||||||  ||||||||| |||||||| |||||    
T  30256734 ttatgtccacgaactaagcccaacagtgttggtcgtgatggggtgtgtttaagagtcccacatc 30256797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 6400782 - 6400732
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| ||| |||||||    
T  6400782 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggggtgttaa 6400732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 12330106 - 12330009
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||| |||  |  |||||||||| ||||||||| |||||||| |||||  | || |||||| ||||  ||||| |||||||||    
T  12330106 ttatgtccacgaaccaagcccaattatgctggtcgtgagggggtgtgtt-aagagtcccacatcggataagatatgatataacaatgtgtttataagtg 12330009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3680160 - 3680230
Alignment:
Q  18 atccaccatt-atgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||| |||||||| ||||||||| |||||| ||||||||||| ||| ||||| |||||||| |||||    
T  3680160 atccaccatttatgtccacaaaccaagcccaatagtgttggtcgtgag-gggggtgtt-aagagtcccacatc 3680230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31961100 - 31961163
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    ||||||||||| |||||||| ||||||| | |||||||| || |||||| |||||||| ||||||    
T  31961100 ttatgtccacggaccaagcccaatagtactagtcgtgaggggatgtgtt-aagagtcccacatca 31961163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 13574847 - 13574772
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatg 101  Q
    |||||||||||||||||||| ||||||  | |||||||| | |||||||||||||||| |||||  ||||||||||    
T  13574847 ttatgtccacgaaccaagcccaatagtgctagtcgtgagggagtgtgttaaagagtcccacatcggacaaaatatg 13574772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 35038356 - 35038294
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||| |||||    
T  35038356 ttatgtccacgaaccaagcccaatagtactggtcgtgagggggtgtgtt-aagagtcccacatc 35038294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 4155481 - 4155543
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||| |||||||||||| ||||||  |||||||||||||||||||| |||||||| |||||    
T  4155481 ttatgtcgacgaaccaagcccaatagtgctggtcgtgagagggtgtgtt-aagagtcccacatc 4155543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 34992763 - 34992825
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  34992763 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 34992825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 20327776 - 20327726
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||| |||||||||| |||||| ||||||||||| |||||||||||    
T  20327776 ttatgtccaggaaccaagcccaatagtgttggtcgtgagcgggtgtgttaa 20327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 45828196 - 45828265
Alignment:
Q  55 tggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||| |||||||||||||||||| |||||  |||||| ||| | | |||||||| |||||||||    
T  45828196 tggtcgtgagggggtgtgttaaagagtcccacatcggacaaaagatggcctgaacatgtgtttataagtg 45828265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 19954379 - 19954318
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| ||||| |||||||| |||||    
T  19954379 ttatgtccacgaaccaagcccaatagtactggtcgtgag-gggggtgtt-aagagtcccacatc 19954318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 31317388 - 31317450
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||||||||||| |  ||||||  |||||||||| ||||||||| ||||||||||||||    
T  31317388 ttatgtccacgaaccaaactcaatagtgctggtcgtgagggggtgtgtt-aagagtcctacatc 31317450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 16239749 - 16239799
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||  ||||||  |||||||||| |||||||||||    
T  16239749 ttatgtccacgaaccaagctcaatagtgatggtcgtgagggggtgtgttaa 16239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 29215750 - 29215701
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||||||||||| || |||||| ||||||||||| |||||||||||    
T  29215750 ttatgtccacgaaccaaacccaatagtgttggtcgtgag-gggtgtgttaa 29215701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 33381115 - 33381016
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtga 125  Q
    ||||||||||||||||| || | ||||  ||||||||||  | |||||||||||| ||||||||| |||||| ||| ||| |||||||| ||||| ||||    
T  33381115 ttatgtccacgaaccaaacccagtagtgctggtcgtgaggagatgtgttaaagagacctacatcagacaaaagatggcatgaacatgtgtttataggtga 33381016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 41069264 - 41069335
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaa 97  Q
    |||||||||||||||||||  ||||||| |||||||||| | ||||||||||||||||  ||||| ||||||    
T  41069264 ttatgtccacgaaccaagctcaatagtactggtcgtgagggagtgtgttaaagagtcccgcatcagacaaaa 41069335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 16533469 - 16533529
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctaca 87  Q
    |||||||||||||||||| | ||||||  |||||||||||||||||||| ||||||||||||    
T  16533469 ttatgtccacgaaccaaggccaatagtgctggtcgtgagagggtgtgtt-aagagtcctaca 16533529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 2029926 - 2029988
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  2029926 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 2029988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 2464790 - 2464861
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaa 97  Q
    |||||||||||||||||||  ||||||  || || |||||| ||||||||||||||||| |||| |||||||    
T  2464790 ttatgtccacgaaccaagctcaatagtgatgatcatgagagcgtgtgttaaagagtcctgcatcgaacaaaa 2464861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 5711601 - 5711539
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  5711601 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 5711539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 17525261 - 17525210
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaa 77  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||||||    
T  17525261 ttatgtccacgaaccaagcccaatagtgatggtcgtgagtgggtgtgttaaa 17525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 14466337 - 14466287
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  14466337 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 14466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 42895405 - 42895461
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtc 82  Q
    ||||||||  ||||||| || |||||| ||||||||||||| |||||||||||||||    
T  42895405 ttatgtccctgaaccaaacctaatagtgttggtcgtgagagcgtgtgttaaagagtc 42895461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 16419424 - 16419486
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||  ||||||  |||||||||| ||||||||| |||||||| |||||    
T  16419424 ttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 16419486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 33606216 - 33606154
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  ||||||||||  |||||||| |||||||| |||||    
T  33606216 ttatgtccacgaaccaagcctaatagtgatggtcgtgaggtggtgtgtt-aagagtcccacatc 33606154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 36063304 - 36063359
Alignment:
Q  27 tatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtc 82  Q
    |||||||||||||||| || |||||| ||| |||| | ||||||||||||||||||    
T  36063304 tatgtccacgaaccaaacctaatagtgttgatcgtaaaagggtgtgttaaagagtc 36063359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 37812430 - 37812368
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| |||| |  |||||||||| ||||||||| |||||||| |||||    
T  37812430 ttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtgtt-aagagtcccacatc 37812368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 44404088 - 44404026
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||| |||||||||| |||||| ||||||||||  ||||||||| ||||||| ||||||    
T  44404088 ttatgtccatgaaccaagcccaatagtgttggtcgtgatggggtgtgtt-aagagtcatacatc 44404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 13250184 - 13250128
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtc 82  Q
    ||||||||||||| || ||| ||||||  |||||||||| || ||||||||||||||    
T  13250184 ttatgtccacgaagcatgcccaatagtgatggtcgtgaggggatgtgttaaagagtc 13250128  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 67407 - 67504
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||  |||||| ||||  ||||  | ||||||| ||||||| ||||||||| |||| |||||||||| ||||| |||||||||    
T  67407 ttatgtccacgaaccaagctcaatagtgttggctgtgacggtgtgtgtt-aagagtcttacatcaaataaaagatgacataaatatgtgtttataagtg 67504  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 2938137 - 2938222
Alignment:
Q  38 accaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||| ||| ||||||||||| ||||| |||||||||| |||| |||||||||||||||||  || |||| ||| |||||||||    
T  2938137 accaagcccaattgtattggtcgtaagagg-tgtgttaaagtgtcccacatcaaacaaaatatggtatgaacaagtgtttataagtg 2938222  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 40898877 - 40898780
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||||||||||||  |||||| ||||  ||||  | ||||||| ||||||| ||||||||| |||| |||||||||| ||||| |||||||||    
T  40898877 ttatgtccacgaaccaagctcaatagtgttggctgtgacggtgtgtgtt-aagagtcttacatcaaataaaagatgacataaatatgtgtttataagtg 40898780  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25620293 - 25620356
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    |||||||||||||||||||| |||||| ||||||||||  | ||||||| |||||||||||||||    
T  25620293 ttatgtccacgaaccaagcccaatagtgttggtcgtgaaggtgtgtgtt-aagagtcctacatca 25620356  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 1596750 - 1596812
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||||| ||||||| |||||||| |||||    
T  1596750 ttatgtccacgaaccaagcccaatagtgctggtcgtgagagtgtgtgtt-aagagtcccacatc 1596812  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 2315188 - 2315138
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||| ||||    
T  2315188 ttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtattaa 2315138  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 21861451 - 21861501
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  21861451 ttatgtccacgaaccaagcctaatagtgctggtcgtgagggggtgtgttaa 21861501  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 36277153 - 36277103
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  36277153 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 36277103  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 3519887 - 3519825
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| |||| |  |||||||||| ||||||||| |||||||| |||||    
T  3519887 ttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtgtt-aagagtcccacatc 3519825  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 10420766 - 10420715
Alignment:
Q  73 ttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    |||||||||| |||||| || |||||||||||| |||||||| |||||||||    
T  10420766 ttaaagagtcttacatcgaaaaaaatatgacatgaacatgtgtttataagtg 10420715  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 29469762 - 29469824
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||||||| |||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  29469762 ttatgtccacgaatcaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 29469824  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 33834348 - 33834410
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||| ||| |||||||| |||||    
T  33834348 ttatgtccacgaaccaagcccaatagtgttggtcgtgaaggggtgggtt-aagagtcccacatc 33834410  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 40746194 - 40746133
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  40746194 ttatgtccacgaaccaagcccaatagtgctggtcgtgag-gggtgtgtt-aagagtcccacatc 40746133  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 48661482 - 48661431
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattgg-tcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| |||||| |||| ||||||| |||||||||||    
T  48661482 ttatgtccacgaaccaagcccaatagtgttggttcgtgagggggtgtgttaa 48661431  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 1936275 - 1936177
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacatgtgcttataagtg 124  Q
    ||||||| |||||||| ||| |||||| |||||| |||   ||||||||||||||||  ||||||||||| || |  | | |||||||| |||||||||    
T  1936275 ttatgtcaacgaaccatgcccaatagtgttggtcatgaagaggtgtgttaaagagtcacacatcaaacaacatgtagccttaacatgtgtttataagtg 1936177  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 4886486 - 4886524
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgag 64  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  4886486 ttatgtccacgaaccaagcccaatagtactggtcgtgag 4886524  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 22574758 - 22574808
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||| |||||||||||| |||||| |||||||||||  ||||||||||    
T  22574758 ttatgtctacgaaccaagcccaatagtgttggtcgtgaggtggtgtgttaa 22574808  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 31892309 - 31892359
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||||||||    
T  31892309 ttatgtccacgaaccaagcccaataatgatggtcgtgagggggtgtgttaa 31892359  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 21821962 - 21822011
Alignment:
Q  27 tatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaa 76  Q
    ||||||||||||||| ||  |||||| ||||||||||| |||||||||||    
T  21821962 tatgtccacgaaccaggcataatagtgttggtcgtgagggggtgtgttaa 21822011  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 21109295 - 21109231
Alignment:
Q  47 aatagtattggtcgtgagagggtgtgttaaagagtcctacatcaaacaaaatatgacataaacat 111  Q
    |||||| |||| |||||||| |||||||||||||||  |||||| | |||| ||||| |||||||    
T  21109295 aatagtgttggacgtgagagagtgtgttaaagagtcacacatcagataaaagatgacttaaacat 21109231  T

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Target: scaffold0519 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 2073 - 2135
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    |||||||||||||||||||| ||||||  |||||||||| ||||||||| |||||||| |||||    
T  2073 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatc 2135  T

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Target: scaffold0692 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 5681 - 5633
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgtt 74  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||||||    
T  5681 ttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgtt 5633  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 81998 - 82061
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatca 90  Q
    ||||||||| |||||||||| ||||||  |||||||||| ||||||||| |||||||| ||||||    
T  81998 ttatgtccatgaaccaagcccaatagtgctggtcgtgagggggtgtgtt-aagagtcccacatca 82061  T

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Target: scaffold0459 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 13255 - 13317
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||| |||||||||| |||||| ||||||||||  ||||||||| ||||||| ||||||    
T  13255 ttatgtccatgaaccaagcccaatagtgttggtcgtgatggggtgtgtt-aagagtcatacatc 13317  T

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Target: scaffold0366 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 10896 - 10958
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||| |||||||||| |||||| ||||||||||  ||||||||| ||||||| ||||||    
T  10896 ttatgtccatgaaccaagcccaatagtgttggtcgtgatggggtgtgtt-aagagtcatacatc 10958  T

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Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 14562 - 14624
Alignment:
Q  26 ttatgtccacgaaccaagccaaatagtattggtcgtgagagggtgtgttaaagagtcctacatc 89  Q
    ||||||||| |||||||||| |||||| ||||||||||  ||||||||| ||||||| ||||||    
T  14562 ttatgtccatgaaccaagcccaatagtgttggtcgtgatggggtgtgtt-aagagtcatacatc 14624  T

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