View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_25 (Length: 300)
Name: NF17535_low_25
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 283
Target Start/End: Complemental strand, 3173794 - 3173540
Alignment:
| Q |
29 |
ttatgctaatttatcttcttttttgttgaaaaaatataaatttgtgcatgattgattattagtaccttaatacaccaagagaagattgaaataaaccagc |
128 |
Q |
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| T |
3173794 |
ttatgctaatttatcttcttttttgttgaaaaaatataaatttgtgcatgattgattattagtaccttaatacaccaagagaagattggaataaaccagc |
3173695 |
T |
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| Q |
129 |
aaagaaagtggcagtgaaagccaatttaagatagagaattggatcttgactataagaaacactttcacttaacattgatcccataaccaatgatgcaatt |
228 |
Q |
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| T |
3173694 |
aaagaaagtggcagtgaaagccaatttaagatagagaattggatcttgactataagaaacactttcacttaacattgatcccataaccaatgatgcaatt |
3173595 |
T |
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| Q |
229 |
gaaacaggaccaacaccaagatgtctagaacttccaagtactgaatatatcaaag |
283 |
Q |
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| T |
3173594 |
gaaacaggaccaacaccaagatgtctagaacttccaagtactgaatatatcaaag |
3173540 |
T |
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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 266
Target Start/End: Original strand, 44013359 - 44013534
Alignment:
| Q |
91 |
taccttaatacaccaagagaagattgaaataaaccagcaaagaaagtggcagtgaaagccaatttaagatagagaattggatcttgactataagaaacac |
190 |
Q |
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| T |
44013359 |
taccttagtataccaagagaagcttggaataaaccagcaacaaaagtggcagtgaaagccaattgaagataaagagtaggattttgagtgaaagaaacag |
44013458 |
T |
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| Q |
191 |
tttcacttaacattgatcccataaccaatgatgcaattgaaacaggaccaacaccaagatgtctagaacttccaag |
266 |
Q |
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| T |
44013459 |
tttcactcaacattgatcccataaccaaagatgcaattgaaactggtccaacaccaacatgtcttgaacttccaag |
44013534 |
T |
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