View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17535_low_28 (Length: 273)
Name: NF17535_low_28
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 34863128 - 34863367
Alignment:
| Q |
25 |
ctcttacgttctacaatacacgagacgtaaaacaaaatgagatataatatccttgttcagaacttcagaagcatgttgatgtctcatgttcattttccat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34863128 |
ctcttacgttctacaatacacgagacgtaaaacaaaatgagatataatatccttgttcagaacttcagaagcatgttgatgtctcatgttcattttccat |
34863227 |
T |
|
| Q |
125 |
aggtcctttacctgtggcaaatgaggtttttacatgagaatagttcacaagagaaaatgaatatctagtaaactaatgatctattcatattagcaaaaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34863228 |
aggtcctttacctgtggcaaatgaggtttttacatgagaatagttcacaagagaaaatgaatatctagtaaactaatgatctattcatattagcaaaaaa |
34863327 |
T |
|
| Q |
225 |
ccagaattttaccaatttttccatttcatccggtttcttc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34863328 |
ccagaattttaccaatttttccatttcatccggtttcttc |
34863367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 28735076 - 28735015
Alignment:
| Q |
27 |
cttacgttctacaatacacgagacgtaaaac-aaaatgagatataatatccttgttcagaac |
87 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
28735076 |
cttacgttctacaatacaccaaacgtaaaacaaaaatgcgatataatatccttgttcagaac |
28735015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 28735192 - 28735119
Alignment:
| Q |
49 |
acgtaaaac-aaaatgagatataatatccttgttcagaacttcagaagcatgttgatgtctcatgttcattttc |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| |||||| || ||||| ||||||| |||| |
|
|
| T |
28735192 |
acgtaaaaccaaaatgcgatataatatccttgttcagaacttcagtagcatgctgttgtcttatgttcactttc |
28735119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University