View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_29 (Length: 273)
Name: NF17535_low_29
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 24815249 - 24815511
Alignment:
| Q |
1 |
ttatgaaaattctaattttataattcatttatcacaaacttaaattagttgtttggaatnnnnnnnnngagattaagttatatacattaatggtgtaaat |
100 |
Q |
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| T |
24815249 |
ttatgaaaattctaattttataattcatttatcacaaacttaaattagttgtttggaataaaaaaa--gagattaagttatatacattaatggtgtaaat |
24815346 |
T |
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| Q |
101 |
ttttccagcaaatgcattcgattaatttatgtctagatatttgtacatatataggatattttataaactaatctaaaaaagtggcattttaaagttatat |
200 |
Q |
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| T |
24815347 |
ttttccagcaaatgcatttgattaatttatgtctagatatttgtacatatataggatattttataaactaatctaaaaaagtggcattttaaagttatat |
24815446 |
T |
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| Q |
201 |
atttggatac--annnnnnnnnnnggcaaaacataactggatacccgtgtaaacaaaaatatatt |
263 |
Q |
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| T |
24815447 |
aattggatacatatttttttttttggcaaaacataactggatacccgtgtaaacaaaaatatatt |
24815511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 38339246 - 38339185
Alignment:
| Q |
112 |
atgcattcgattaatttatgtctagatatttgtacatatata-ggatattttataaactaat |
172 |
Q |
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| T |
38339246 |
atgcatccgattaatttatgtgtagatatttatagagatatagggatatttaataaactaat |
38339185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 47433122 - 47433384
Alignment:
| Q |
1 |
ttatgaaaattctaattttataattcatttatcacaaacttaaattagttgtttggaatnnnnnnnnngagattaagttatatacattaatggtgtaaat |
100 |
Q |
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| T |
47433122 |
ttatgaaaattctaattttataattcatttatcacaaacttaaattagttgtttggaataaaaaaa--gagattaagttatatacattaatggtgtaaat |
47433219 |
T |
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| Q |
101 |
ttttccagcaaatgcattcgattaatttatgtctagatatttgtacatatataggatattttataaactaatctaaaaaagtggcattttaaagttatat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47433220 |
ttttccagcaaatgcatttgattaatttatgtctagatatttgtacatatataggatattttataaactaatctaaaaaagtggcattttaaagttatat |
47433319 |
T |
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| Q |
201 |
atttggatac--annnnnnnnnnnggcaaaacataactggatacccgtgtaaacaaaaatatatt |
263 |
Q |
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| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47433320 |
aattggatacatatttttttttttggcaaaacataactggatacccgtgtaaacaaaaatatatt |
47433384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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