View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_33 (Length: 246)
Name: NF17535_low_33
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_33 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 17126125 - 17126265
Alignment:
| Q |
11 |
catcatcataacatgaacatgagcacgacttttgttggcggccagtaaaaaagagtcacaaatattttccttactaatgtacaatttttcaataaatgcg |
110 |
Q |
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| T |
17126125 |
catcataataacatgaacatgagcacgacttttgttggcggccagtaaaaaagagtcacaaatattttccttactaatgtacaatttttcaataaatgtg |
17126224 |
T |
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| Q |
111 |
tctttggcccataaaataaagataaatgcatctctagatgc |
151 |
Q |
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| T |
17126225 |
tccttggcccataaaataaagataaatgtatctctagatgc |
17126265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 17116687 - 17116827
Alignment:
| Q |
11 |
catcatcataacatgaacatgagcacgacttttgttggcggccagtaaaaaagagtcacaaatattttccttactaatgtacaatttttcaataaatgcg |
110 |
Q |
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| T |
17116687 |
catcataataacgtgaacatgagcacgacttttgttggcggccagtaaaaaagagtcacaaatattttccttactaatgtacaatttttcaataaatgtc |
17116786 |
T |
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| Q |
111 |
tctttggcccataaaataaagataaatgcatctctagatgc |
151 |
Q |
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| T |
17116787 |
tctttggcccataaaataaagataaatgtatctctagatgc |
17116827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 17116857 - 17116907
Alignment:
| Q |
181 |
cttcaagtgttgaaacaaatatctttgtgaagatgcaaatatctgattagt |
231 |
Q |
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| T |
17116857 |
cttcaagtgttgaaacaaatatctttgtgaagatgcaaatatctgtttagt |
17116907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 17126291 - 17126334
Alignment:
| Q |
181 |
cttcaagtgttgaaacaaatatctttgtgaagatgcaaatatct |
224 |
Q |
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| T |
17126291 |
cttcaagggttgaaacaaatatctttgtgaagatgcaaatatct |
17126334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 17507 - 17551
Alignment:
| Q |
187 |
gtgttgaaacaaatatctttgtgaagatgcaaatatctgattagt |
231 |
Q |
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| T |
17507 |
gtgttgaaacaaatatcttcgtgaagatgcaaatctctgtttagt |
17551 |
T |
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