View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_34 (Length: 242)
Name: NF17535_low_34
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 24815170 - 24814945
Alignment:
| Q |
1 |
tgaaggcccaagagtaaaaccgaataaaaactcattttagcctccatctttaactaaccctaattctgccagtgcctcatcaacacacctgcttccgcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24815170 |
tgaaggcccaagagtaaaaccgaataaaaactcattttggcctccatctttcactaaccctaattctgccagtgcctcatcaacacacctgcttccgcac |
24815071 |
T |
|
| Q |
101 |
aagcacccaaattctttggtaagatctagttttctacccttgagcttgaggtttcttcgatttggattggattattttgagataagctcttttatgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24815070 |
aagcacccaaattctttggtaagatctagttttctacccttgagcttgaggtttcttcgatttggattggattattttgagataagctcttttatgttaa |
24814971 |
T |
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| Q |
201 |
ttatgattttgtttattgaaatctgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24814970 |
ttatgattttgtttattgaaatctgt |
24814945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 38336190 - 38336313
Alignment:
| Q |
93 |
ttccgcacaagcacccaaattctttggtaagatctagttttctacccttgagcttgaggtttcttcgatttggattggattattttgagataagctcttt |
192 |
Q |
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|||||||||| ||| ||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
38336190 |
ttccgcacaaacacacaatttctctggtaagatctagttttatacccttgag-----ggtttcttcgatttggattggattattttgaaataagc-attt |
38336283 |
T |
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| Q |
193 |
tatgttaattatgattttgtttattgaaat |
222 |
Q |
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||||||| |||| |||||||||||| |||| |
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| T |
38336284 |
tatgttatttataattttgtttatttaaat |
38336313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47433043 - 47432818
Alignment:
| Q |
1 |
tgaaggcccaagagtaaaaccgaataaaaactcattttagcctccatctttaactaaccctaattctgccagtgcctcatcaacacacctgcttccgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47433043 |
tgaaggcccaagagtaaaaccgaataaaaactcattttggcctccatctttcactaaccctaattctgccagtgcctcatcaacacacctgcttccgcac |
47432944 |
T |
|
| Q |
101 |
aagcacccaaattctttggtaagatctagttttctacccttgagcttgaggtttcttcgatttggattggattattttgagataagctcttttatgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47432943 |
aagcacccaaattctttggtaagatctagttttctacccttgagcttgaggtttcttcgatttggattggattattttgagataagctcttttatgttaa |
47432844 |
T |
|
| Q |
201 |
ttatgattttgtttattgaaatctgt |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
47432843 |
ttatgattttgtttattgaaatctgt |
47432818 |
T |
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