View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_4 (Length: 463)
Name: NF17535_low_4
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 26217994 - 26217609
Alignment:
| Q |
10 |
aagaatataagaattagaatctttcatcggtgatgtgatattcctactacgctatatttctaacttttgaaaattgattgactggcctgacatgtcttct |
109 |
Q |
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| T |
26217994 |
aagaatgtaagaattagaatctttcaccggtgatgtgatattcctactatgctatatttttaacttttgaaaattgattgactggcctgacatgtcttct |
26217895 |
T |
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| Q |
110 |
taagttttaaaaatattttgcatcactcaagcttcaccctatgttgctttnnnnnnnttaaaagtagtaatctacaaatagaagatgagagataattaga |
209 |
Q |
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| T |
26217894 |
taagttttaaaaatattttgcatcactcaagcttcaccctatgttgctttaaaaaaattaaaagtagtaatctacaaatagaagatgagagataattaga |
26217795 |
T |
|
| Q |
210 |
tcattagtacatatttagactccgtgaatttctcctttctaatcagggctgataagccttcatcataaagaaacccataagaaagggtccccttgttgaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217794 |
tcattagtacatatttagactccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccccttgttgaa |
26217695 |
T |
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| Q |
310 |
gacctcttgcaagtatgatagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
395 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217694 |
gacctcttgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacataatcgaa |
26217609 |
T |
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