View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17535_low_42 (Length: 204)
Name: NF17535_low_42
Description: NF17535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17535_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 7997902 - 7998072
Alignment:
| Q |
14 |
agaagcataggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattagctcgaacgaatctaattctaaaaacattggacaaatttgt |
113 |
Q |
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| T |
7997902 |
agaaacattggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattggctcaaacgaatctaattctaaaaacattggacaaatttgt |
7998001 |
T |
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| Q |
114 |
ttccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatgat |
184 |
Q |
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| T |
7998002 |
ttccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatgat |
7998072 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 7979048 - 7979122
Alignment:
| Q |
88 |
attctaaaaacattggacaaatttgtttccgagacggatgtaaataaagcctttaaatagagcatgaattagtcc |
162 |
Q |
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| T |
7979048 |
attctaaaaatatttgataaatttgtgtttgatacggatgtaaataaagccttctaatagaacatgaattagtcc |
7979122 |
T |
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