View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17536_high_3 (Length: 533)
Name: NF17536_high_3
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 36 - 518
Target Start/End: Original strand, 36072580 - 36073062
Alignment:
| Q |
36 |
tctgtcttccagtaggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagcttt |
135 |
Q |
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| T |
36072580 |
tctgtcttccaataggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagcttt |
36072679 |
T |
|
| Q |
136 |
gagattccttacaaggttttcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgc |
235 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072680 |
gagattccttacaaggttgtcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgc |
36072779 |
T |
|
| Q |
236 |
aatgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072780 |
aatgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagt |
36072879 |
T |
|
| Q |
336 |
tgaaaattttgaacatgtagcctattagcttctttcaattctatctacacaccagtttgagacatggtaaccaattagcttctttccttcatcatttggc |
435 |
Q |
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| T |
36072880 |
tgaaaattttgaacatgtagcctattagcttctttcaattctatctacacaccagtttgagacatggtaaccaattagcttctttccttcatcatttggc |
36072979 |
T |
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| Q |
436 |
ttaggatacaccacaccataatcagttgtacctttaaaatacctcatgatcctttttattgcttgcatatatatgtgacaact |
518 |
Q |
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| T |
36072980 |
ttaggatacaccacaccataatcagttgtacctttaaaatacctcatgatcctttttattgcttgcatatatatgtgacaact |
36073062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 353
Target Start/End: Original strand, 12695851 - 12696164
Alignment:
| Q |
40 |
tcttccagtaggtgagaatgatctt--gctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagctttga |
137 |
Q |
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|||| ||||| ||||||| |||||| |||| | ||||||||||||| ||||||||| | | || ||||| | ||||||||||||| ||||||| || |
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| T |
12695851 |
tcttgcagtaagtgagaaagatcttttgctcttatttacttgatcacgaagaaagtggtattcgg--tctatatctgcttgctcctcccatgagctatgg |
12695948 |
T |
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| Q |
138 |
gattccttacaaggttttcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgcaa |
237 |
Q |
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| T |
12695949 |
gatcccttgcaacgttgatagcgtatttattttccaccaacaactcaatttgttctcctacacctatcttcatttcaagtagaagttattgtaaccataa |
12696048 |
T |
|
| Q |
238 |
tgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagttg |
337 |
Q |
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| ||| ||||||| | |||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || ||| | |||||||| |
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| T |
12696049 |
tccttatcatgttgcattgcaaggcgatatgtattcaacttcacaagttgacagtgctacaactgtttgtttctttgaactccgggagaatggtgagttg |
12696148 |
T |
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| Q |
338 |
aaaattttgaacatgt |
353 |
Q |
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|||||||||||||||| |
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| T |
12696149 |
aaaattttgaacatgt |
12696164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 354
Target Start/End: Original strand, 12447467 - 12447659
Alignment:
| Q |
162 |
atttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgcaatgcttgacatgttgtagtgcaagc |
261 |
Q |
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|||| ||||||||||| | || ||| || ||||||| | ||||||||||| | |||||||||||| |||| |||| |||||||| || | ||||| | |
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| T |
12447467 |
atttgttgtccaccaacatctcaatctgttctcctaagcctatcttcatttcatgtagcagtgattgtaaccacaatacttgacatactgcattgcaaac |
12447566 |
T |
|
| Q |
262 |
tgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagttgaaaattttgaacatgta |
354 |
Q |
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| T |
12447567 |
tgatatgtatatagcttcacaagttgacagtgctagaattgtatgtttctttgaactctatgagattggttagttgaaaattctgaaaatgta |
12447659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 12447368 - 12447416
Alignment:
| Q |
46 |
agtaggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtg |
94 |
Q |
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| T |
12447368 |
agtaggtgagaatgatcttgttcttatttacttgatcacgaagaaagtg |
12447416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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