View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17536_low_1 (Length: 628)
Name: NF17536_low_1
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 5366107 - 5365495
Alignment:
| Q |
1 |
agctgatttcaccttcgaattaaccggaaagtgggccaacaacatcctcctcgaaacagcacgagccatagcagnnnnnnncagcactcgtttacaacaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5366107 |
agctgatttcaccttcgaattaaccggaaggtgggccaacaacatcctcctcgaaacagcacgagccatagcagaaaaaaacagcactcgtttacaacaa |
5366008 |
T |
|
| Q |
101 |
ctcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccgaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366007 |
ctcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccgaag |
5365908 |
T |
|
| Q |
201 |
ccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365907 |
ccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagtcc |
5365808 |
T |
|
| Q |
301 |
gtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacacttattgc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365807 |
gtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacacttattgc |
5365708 |
T |
|
| Q |
401 |
actcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgttcaaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365707 |
actcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgttcaaa |
5365608 |
T |
|
| Q |
501 |
aagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaaattcaacgttattcatcactccggcgatctttctga |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5365607 |
aagttatgaaggaaattggtgctagaatggaaaaattcgctagactcatgggagttccatttaaattcaacgttattcatcactccggcgatctttctga |
5365508 |
T |
|
| Q |
601 |
tttgaattttttg |
613 |
Q |
| |
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||||||||||||| |
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| T |
5365507 |
tttgaattttttg |
5365495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 570
Target Start/End: Original strand, 39987510 - 39987802
Alignment:
| Q |
284 |
ttccaagaagttagtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgata |
383 |
Q |
| |
|
||||||||||||||||| |||||||| || || || || ||| || || || || |||||||| || |||||| | | || || ||||||||||||| |
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| T |
39987510 |
ttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaacttcacataattgata |
39987609 |
T |
|
| Q |
384 |
ttagtaacacttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgc |
483 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || | |||||||||||||| || |||| ||||| |||||||| ||| |||| || | |||||||| |
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| T |
39987610 |
ttagcaacacttattgcactcaatggccaacactcctcgaagcgttggccacccgctctgatgatacgcctcaccttcgtttaaccactgtagtcactgc |
39987709 |
T |
|
| Q |
484 |
------tggtggttctgttcaaaaagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaaattcaa |
570 |
Q |
| |
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||||| || || |||||||| ||||||||||||||| | || ||||||||||| || || || |||||||| || ||||||||||| |
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| T |
39987710 |
aatcagcggtggctcggtgcaaaaagtcatgaaggaaattggttcaaggatggaaaaatttgctaggcttatgggagtgccgtttaaattcaa |
39987802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 39987321 - 39987382
Alignment:
| Q |
95 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
156 |
Q |
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|||||||||||||||||||| ||||| || || |||| |||||||||| ||| |||||||| |
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| T |
39987321 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
39987382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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