View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17536_low_10 (Length: 204)
Name: NF17536_low_10
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 7740514 - 7740343
Alignment:
| Q |
17 |
aatatgagccaagtggccagccttctttatctcttgtaatgttgatttatttcccagcttcctgtaaatatgtatcaaacacttaaaccacagatcaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7740514 |
aatatgagccaagtggccagccttctttatctcttgtaatgttgatttatttcccagcttcctgtaaatatgtatcaaacacttaaaccacagatcaatt |
7740415 |
T |
|
| Q |
117 |
gcatataaaatttaagaatggatttgaatatttataattttgtgatcaagatttcttactctttcatgtttt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7740414 |
gcatataaaatttaagaatggatttgaatatttataattttgtgatcaagatttcttactctttcatgtttt |
7740343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 7769884 - 7769844
Alignment:
| Q |
148 |
ttataattttgtgatcaagatttcttactctttcatgtttt |
188 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7769884 |
ttataattgtgtgatcaagatttcttactctttcatgtttt |
7769844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University