View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17536_low_2 (Length: 575)
Name: NF17536_low_2
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Complemental strand, 39688935 - 39688356
Alignment:
| Q |
18 |
acatattggtatcattgtgcaataattaatcaaagatatgttattatctatacaggtgaagaatgtaacactgttgttatcatagcatgga--------- |
108 |
Q |
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| T |
39688935 |
acatattggtatcattgtgcaataattaatcaaagatatgttattatctacacaggtgaagaatgtaacactgttgttatcatagcatggaatataaaat |
39688836 |
T |
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| Q |
109 |
-----------tcatcaactttgactttattgagagttcctaggacactagaacacaatacaacctaaaaaagcttcatcatattcacaagttatgtaaa |
197 |
Q |
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| T |
39688835 |
taggtcttgtatcatcaactttgactttattgagagctcctaggacactagaacacaatacaacctaaaaaagcttcatcatattcacaagttatgtaaa |
39688736 |
T |
|
| Q |
198 |
tcttaacactttttcattgtgaagttgatcgtaaatttgttaattttgttcatttgagcagcatatgtttcttattcttatgagattgcagctaggtagc |
297 |
Q |
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| T |
39688735 |
tcttaacactttttcattgtgaagttgatcgtaaatttgttaattttgttcatttgagcagcatatgtttcttattcttatgagattgcagctaggtagc |
39688636 |
T |
|
| Q |
298 |
tagattcttcttgcacttatgaacttagttattttgaatgggaaatcc---tgctaatccataagcaacggagtgatgtcaatgcaagaaacaacatgtg |
394 |
Q |
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| T |
39688635 |
tagattcttcttgcacttatgaacttagttattttgaatgggaaatccttatgctaatccataagcaacggagtgatgtcaatgtaagaaacaacatgtg |
39688536 |
T |
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| Q |
395 |
gatgtgtcggtgcaagtatatagcagatcaaaaagaggc-------caactaacaatgttggtgggttgggttgaattgagtgctcaatttcagtacttt |
487 |
Q |
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| T |
39688535 |
gatgtgtcggtgcaagtatatagaagatcaaaaagaggccaactagcaactaacaatgttggtgggttaggttgaattgagtgctcaatttcagtacttt |
39688436 |
T |
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| Q |
488 |
tatgtggggtgtgtaatacagttatagtaagtggaagatacacttccgtgatgaacaaaaacatgatttttgtctgtgct |
567 |
Q |
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| T |
39688435 |
tatgtggggtgtgtaatacagttatagtaagtggaagatacacttccgtgatgaacaaaaacatgatttttgtctgtgct |
39688356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 30903004 - 30903094
Alignment:
| Q |
261 |
tatgtttcttattcttatgagattgcagctaggtagctagattcttcttgcacttatgaacttagttattttgaatgggaaatcctgctaa |
351 |
Q |
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| T |
30903004 |
tatgtttcttattctcctgagattgcagctaggtaccttgattcatctagcagttattaacttggttattttgaattggagatcctgctaa |
30903094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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