View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17536_low_5 (Length: 375)
Name: NF17536_low_5
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 12790797 - 12790486
Alignment:
| Q |
1 |
ccaaaaagattagaatcacttaccactcaataaaaccaaatgaaaggaaatttttaagggtgggttatatgaatgatgaaagaaacaaagaaatgagaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12790797 |
ccaaaaagatgagaatcacttaccactcaataaaaccaaatgaacggaaatttttaagggtgggttatatgaatgatggaagaaacaaagaaatgagaaa |
12790698 |
T |
|
| Q |
101 |
ataaataattttttatacatatttcaatgaaaagaaaatgacacaattgtcaaagnnnnnnnatgaaaaaattaaatggtgtaaaatagattcctagaaa |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12790697 |
ataaataattttttatacagatttcaatgaaaagaaaatgacacaattgtcaaagtttttttatgaaaaaattaaatggtgtaaaatagattcctagaaa |
12790598 |
T |
|
| Q |
201 |
aagggtctaaacacctaccaagaattatatcgcataagaaggggggttttctgattaattgatatagttgaacttaccaggaacaaaaggaagcagattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12790597 |
aagggtctaaacacctaccaagaattatatcgcataagaaggggggttttctgattaattgatatagttgaacttaccagcaacaaaaggaagcagattt |
12790498 |
T |
|
| Q |
301 |
gcaccaaattgg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12790497 |
gcaccaaattgg |
12790486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 12771858 - 12771809
Alignment:
| Q |
169 |
aaattaaatggtgtaaaatagattcctaga-aaaagggtctaaacaccta |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
12771858 |
aaattaaatggtgtaaaatagcttcctagaaaaaagggtctaaataccta |
12771809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University