View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17536_low_8 (Length: 243)
Name: NF17536_low_8
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 43000907 - 43001121
Alignment:
| Q |
13 |
ataggacaaagaatccacaaagcaaataagaaattcacttaattatggtaaaccaagaacctatccctcacttgtatggaattaagttgttacccgaaat |
112 |
Q |
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| T |
43000907 |
ataggataaagaatccacaaagcaaataagaaattcacttaattatggtaaaccaagaacctatccctcacttgtatggaattaagttgttaaccgaaat |
43001006 |
T |
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| Q |
113 |
tctccatagctaattatgtatttccttattgatcattattcacccacatttatactactactactacgaatcaacattcatgcgttagtaatgttatttt |
212 |
Q |
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| T |
43001007 |
tctccatagctaattatgtatttccttattgatcattattcacccacatttataccactactactacgaatcaacattcatgcgttagtaatgttatttt |
43001106 |
T |
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| Q |
213 |
tccttggttatagtt |
227 |
Q |
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||||||||||||||| |
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| T |
43001107 |
tccttggttatagtt |
43001121 |
T |
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