View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17536_low_9 (Length: 221)
Name: NF17536_low_9
Description: NF17536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17536_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 11685715 - 11685544
Alignment:
| Q |
25 |
attgaatgaagtagggaaaatcactttactcctagcatgcatttgagctctcaatttttctaatttgcatattcataatacagtatcagtcctatttgtt |
124 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11685715 |
attgaatgaagtaaggaaaatcactttactcctatcatgcatttgagctctcaatttttctaatttgcatattcataatacggtatctgtcctatttgtt |
11685616 |
T |
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| Q |
125 |
tctagtgaattccattccattctagcactttcttggattttattcttgattcttgcactttctctacatcatgctat |
201 |
Q |
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| T |
11685615 |
tctagtgaattccattcc-----agcactttcttggatttcattcttgattcttgcactttctctacatcatgctat |
11685544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 11715358 - 11715529
Alignment:
| Q |
25 |
attgaatgaagtagggaaaatcactttactcctagcatgcatttgagctctcaatttttctaatttgcatattcataatacagtatcagtcctatttgtt |
124 |
Q |
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||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11715358 |
attgaatgaagtaagaaaaatcactttactcctatcatgcatttgagctctcaatttttctaatttgcatattcataatacggtatctgtcctatttgtt |
11715457 |
T |
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| Q |
125 |
tctagtgaattccattccattctagcactttcttggattttattcttgattcttgcactttctctacatcatgctat |
201 |
Q |
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| T |
11715458 |
tctagtgaattccattcc-----agcactttcttggatttcattcttgattcttgcactttctctacatcatgctat |
11715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 27653389 - 27653254
Alignment:
| Q |
66 |
tttgagctctcaatttttctaatttgcatattcataatacagtatcagtcctatttgt-ttctagtgaattccattccattctagcactttcttggattt |
164 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||||| || ||| |
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| T |
27653389 |
tttgagctctcaatttt-ctaatttgcatattcataatacagtatcagtcacattttcattcttgtgaattccattccattcctgcactttctagggttt |
27653291 |
T |
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| Q |
165 |
tattcttgattcttgcactttctctacatcatgctat |
201 |
Q |
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| T |
27653290 |
tattcttgattcttgcactatctctacatcatgctat |
27653254 |
T |
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