View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17537_high_14 (Length: 336)
Name: NF17537_high_14
Description: NF17537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17537_high_14 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 8158327 - 8158642
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatc |
122 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158327 |
atcaacaaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatc |
8158426 |
T |
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| Q |
123 |
taagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158427 |
taagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttttt |
8158526 |
T |
|
| Q |
223 |
agctctt-tggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagata |
321 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8158527 |
agctcttgtggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagata |
8158626 |
T |
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| Q |
322 |
tg-aagcctttgtgtt |
336 |
Q |
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|| ||||||||||||| |
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| T |
8158627 |
tgcaagcctttgtgtt |
8158642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 44317689 - 44317359
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatc |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||||| |
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| T |
44317689 |
atcaacaaatgacaagatttcaacttccaaggcttatatttattgacgatctttatgaggaaggagcagatctatggaacattgtagatcaagtaaaatc |
44317590 |
T |
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| Q |
123 |
taagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
44317589 |
taagcttaatcatcgttgtgctgcaattcaagttccaatacacattgacgattgttatattggatttgttgatcttgttaagttagaggcctactatttt |
44317490 |
T |
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| Q |
223 |
agctct----------ttggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatg--caa----gag |
306 |
Q |
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| || || |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||| ||||| | |||| ||| ||| |
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| T |
44317489 |
ctccctaaaatgtttgttagactttttgatcttctcaacaagttaaaggcttacttttttccctctgaaacaccttattataaggatgtacaagtaggag |
44317390 |
T |
|
| Q |
307 |
aagtacccaaagatatg-aagcctttgtgtt |
336 |
Q |
| |
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|||||||| |||||||| ||||||||||||| |
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| T |
44317389 |
aagtacccgaagatatgcaagcctttgtgtt |
44317359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 44307514 - 44307325
Alignment:
| Q |
28 |
caaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagc |
127 |
Q |
| |
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|||||||||||||||||| |||||| | |||||||||| ||||| |||| | || ||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
44307514 |
caaatgacaagatttcaatttccaatgtttatatttatagacgatattgagctggaaggagcagatccatggaacttttttgatcaagtaaaatctaagc |
44307415 |
T |
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| Q |
128 |
ttaatcatcgttgtgctgcaattcaagttccaat---atgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcct |
214 |
Q |
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|||||||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
44307414 |
ttaatcatcgctgtgctgcaattcaagttccattacgaagcattgacgattgttatattggatttgttgatctcgtcaagttaaaggcct |
44307325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 109 - 293
Target Start/End: Complemental strand, 43896967 - 43896773
Alignment:
| Q |
109 |
gatcaagtaaaatctaagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaa |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | | |||||||||||| |||||||||| | | |
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|
| T |
43896967 |
gatcaagtaatatctaagcttaatcatcgttgtgctgcaattcaagttccaatatactttgacaattggtgttttggatttgttgttcttgtcaagatga |
43896868 |
T |
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| Q |
209 |
aggcctacttttttagc-------tctttg---gactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattat |
293 |
Q |
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||||||||| |||| || | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
43896867 |
aggcctactattttcgccttaaaatgtttgttagactttttgatcttgtcaacaagttaaaggcctacttttttcgctctgaaacaccttattat |
43896773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 44302249 - 44302146
Alignment:
| Q |
119 |
aatctaagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactt |
218 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
44302249 |
aatctacgcttaatcatcattgtgctgcaattcaagttccaatacacattcacgattcttatattggatttgttgatcttgtcgagttaaaggcctactt |
44302150 |
T |
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| Q |
219 |
tttt |
222 |
Q |
| |
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|||| |
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| T |
44302149 |
tttt |
44302146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 44302165 - 44302075
Alignment:
| Q |
253 |
agttaaaggcctacttttttcgctctgaaatacctgattatgacgat------gcaagagaagtacccaaagatatg-aagcctttgtgtt |
336 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||| ||||| | | |||||||||||||||||||| ||||||||||||| |
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| T |
44302165 |
agttaaaggcctacttttttcgctttgaaaaacctgattataacgatgtagaagtaggagaagtacccaaagatatgcaagcctttgtgtt |
44302075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 43897062 - 43897019
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatatttatc |
66 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43897062 |
atcaacaaatgacaagatttcaatttccaaggcttatatttatc |
43897019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 44307278 - 44307220
Alignment:
| Q |
242 |
tcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatg |
300 |
Q |
| |
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|||||||||||||||||| | |||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
44307278 |
tcttgccaacaagttaaaaggctactttttttgctctcaaacacctgattaagacgatg |
44307220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 44302296 - 44302256
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatattt |
63 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||| |
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| T |
44302296 |
atcaacaaatgacaagatttcaatttccaaggcttatattt |
44302256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 4085156 - 4084953
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatc |
122 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | ||||||||||||||||| |
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| T |
4085156 |
atcaacaaatgacaagatttcaacttccaaggcttatatttattgacgatcttgatcagaaaggagcagatctatggaacatcgtagatcaagtaaaatc |
4085057 |
T |
|
| Q |
123 |
taagcttaatcatcgttgtgctgcaattcaagttccaat---atgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttt |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
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| T |
4085056 |
taagcttaatcatcgttgtgctgcaattcaagttccaatacgaagcattgacgattgttatattggatttgttgatcttgttaagttaaaggcatacttt |
4084957 |
T |
|
| Q |
220 |
ttta |
223 |
Q |
| |
|
|||| |
|
|
| T |
4084956 |
ttta |
4084953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 4084924 - 4084864
Alignment:
| Q |
236 |
ttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgac |
296 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |
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|
| T |
4084924 |
ttttgatcttgtcaacaagttaaaggcctaccttttttgctctgaaacgtctgattatgac |
4084864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 18702646 - 18702448
Alignment:
| Q |
23 |
atcatcaaatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatc |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
18702646 |
atcaacaaatgacaagatttcaacttcctaggcttatatttattgacgatctgtatcaggaaggagcagatctatggaacattgtagatcaagtaaaatc |
18702547 |
T |
|
| Q |
123 |
taagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttt |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
18702546 |
taagcttaatcatcgttgtgctgcaattcaagttccaatacactttaacgattattatattggatttgttgatcttgtcaagttagaggcctacttttt |
18702448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 18702416 - 18702375
Alignment:
| Q |
252 |
aagttaaaggcctacttttttcgctctgaaatacctgattat |
293 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18702416 |
aagttaaaggcctacttttttcgctctgaaacacctgattat |
18702375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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