View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17537_high_19 (Length: 323)
Name: NF17537_high_19
Description: NF17537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17537_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 83 - 308
Target Start/End: Complemental strand, 23884490 - 23884265
Alignment:
| Q |
83 |
ctgtgcttctgaaagccgattagcactatttgtacagatgcattcaaccaagattcatctttttcccgatgactccaaaaaatttatgccatttagttat |
182 |
Q |
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| T |
23884490 |
ctgtgcttctgaaagccgattagcactatttgtacagatgcattcaaccaagattcatctttttcccgatgactccaaaaaatttatgccatctagttat |
23884391 |
T |
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| Q |
183 |
ctaggtatgaaaataaaccgtctttggattcaaaaatggtagcaagctgcaaattcagaactaaagcagtgattttaaatcaagccatagtactctcaac |
282 |
Q |
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| T |
23884390 |
ctagctatgaaaataaaccgtctttggattcaaaaatggtagcaagctgcaaattcagaactaaagcagtgattttaaatcaagccatagtactctcaac |
23884291 |
T |
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| Q |
283 |
atattccattgctttcctcttcacag |
308 |
Q |
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| T |
23884290 |
atattccattgctttcctcttcacag |
23884265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 23884596 - 23884532
Alignment:
| Q |
24 |
atcatcagtctcattcttaaattagcaaccaaaattatcaaggctatgcctttctcttgctgtgc |
88 |
Q |
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| T |
23884596 |
atcatcagtctcattcttaaattagcaaccaaaattatcaaggctatgcctttctcttgctgtgc |
23884532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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