View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17537_high_1_N (Length: 596)
Name: NF17537_high_1_N
Description: NF17537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17537_high_1_N |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 32062276 - 32062871
Alignment:
| Q |
1 |
agtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttc |
100 |
Q |
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| T |
32062276 |
agtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttc |
32062375 |
T |
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| Q |
101 |
agagaagatacagttgttcgtagatttgttggttctgccattttggatgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatca |
200 |
Q |
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| T |
32062376 |
agagaagatacagttgttcgtagatttgttggttctgccattttggatgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatca |
32062475 |
T |
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| Q |
201 |
acatgaaggaagcaatggatgacataaacaacatgtttgggaagccgatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaa |
300 |
Q |
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| T |
32062476 |
acatgaaggaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaa |
32062575 |
T |
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| Q |
301 |
caatagtggaaaggaattcggtgggtattcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggnnn |
400 |
Q |
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| T |
32062576 |
caatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgatgacctcaaacagaaacaaggaggtaagccaatagattttgttcggaaa |
32062675 |
T |
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| Q |
401 |
nnnngattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaac |
500 |
Q |
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| T |
32062676 |
aaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatgacctcgagcagaaacaac |
32062775 |
T |
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| Q |
501 |
gtcctccactaccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatga |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062776 |
gtcctccactaccaaaatcgcgaggaaagtcaaaggaatcagatttatttgagccaactctccacacaaaggaagccatggatgacattaacatga |
32062871 |
T |
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