View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17537_high_8 (Length: 383)
Name: NF17537_high_8
Description: NF17537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17537_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 569000 - 568640
Alignment:
| Q |
1 |
tcttgtaataaataggagatagcaccatgataaacacccatttctcctttggccaaagtggaagaatgttttccactttctaaccctaaaccagcagctt |
100 |
Q |
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| T |
569000 |
tcttgtaataaataggagatagcaccatgataaacacccatttctcctttggttaaagtggaagaatgttttccactttctaaccctaaaccagcagctt |
568901 |
T |
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| Q |
101 |
caactccaatcaatctcacatctatgtctgatagaaactcatggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttt |
200 |
Q |
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| T |
568900 |
caactccaatcaatctcacatctgtgtctgatagaaactcatggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttt |
568801 |
T |
|
| Q |
201 |
tcctccccatttttcccatgcttgtttccttgtttctttcccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaa |
300 |
Q |
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| T |
568800 |
tcctccccatttttcccatgcttgtttccttgtttctttcccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaa |
568701 |
T |
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| Q |
301 |
cctgacaagtggtagctgttttccaagtctccaacccaacaacgaaaagcctctgatgatg |
361 |
Q |
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| T |
568700 |
cctgacaagtggtagctgttttccaggtctccaacccaacaacgaaaagcctctgatgatg |
568640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 20172542 - 20172427
Alignment:
| Q |
172 |
ccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctttcccaatcactgactgaaactcacgtaccatgg |
271 |
Q |
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||||||| ||| || | ||| ||||| || ||||||||||||||| ||||||| || |||||||||||||| ||||||| |||||||| | |||||| |
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| T |
20172542 |
ccaacacatgctactagaatatctggcttccctccccatttttccaatgcttgctttcttgtttctttccctatcactgcatgaaactctcttaccatca |
20172443 |
T |
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| Q |
272 |
tgggacatggatgtgg |
287 |
Q |
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| ||| |||||||||| |
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| T |
20172442 |
taggatatggatgtgg |
20172427 |
T |
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