View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17537_low_1 (Length: 300)
Name: NF17537_low_1
Description: NF17537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17537_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 33407260 - 33407123
Alignment:
| Q |
16 |
acttatttgacaagaaatacctcaaactaccaatttcaatagtctaccttaaaaagaaacacatgaacgcaagtgaaatagtacaaaaatcattcacaat |
115 |
Q |
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| T |
33407260 |
acttatttgacaagaaatacctcaaactaccaacttcaatagtctaccttaaaaagaaacacatgaacgcaagtgaaatagtacaaagatcattcactat |
33407161 |
T |
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| Q |
116 |
agtactaattaattgtatcatatagtaggaatctgagc |
153 |
Q |
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| T |
33407160 |
agtactaattaattgtatcatatagtagaaaactgagc |
33407123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 33407073 - 33406989
Alignment:
| Q |
207 |
ccacaaattcaattgtgagatagatgcttacaatacccaaatgttaaacattactatcctcactagtaaactacaatagtataat |
291 |
Q |
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| T |
33407073 |
ccacaaattcaattgtgagatagatgcttacaatacccaaatgttaaacattactatcctcactagtaaactacaataatataat |
33406989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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