View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17538_high_2 (Length: 304)
Name: NF17538_high_2
Description: NF17538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17538_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 36 - 304
Target Start/End: Original strand, 23344325 - 23344593
Alignment:
| Q |
36 |
gaataatcttgattaaccagttagaaatgtgttcccttgttgatcatagaaggaaaaatattgttcaccaataggagggaataacatcttgctttcttct |
135 |
Q |
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| T |
23344325 |
gaataatcttgattaaccagttagaaatgtgttcccttgttgatcatagaaggaaaaatattggtcaccaataggagggaataacatcttgctttcttct |
23344424 |
T |
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| Q |
136 |
tcatccatcacccacaatggatctaaatatgaataatcccatgatgatgtagaaggcattataggacaagataaattattactattctcttcactagttc |
235 |
Q |
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| T |
23344425 |
tcatccatcacccacaatggatctaaatatgaataatcccatgatgatgtagaaggcattataggacaagataaattattgctattctcttcactagttc |
23344524 |
T |
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| Q |
236 |
catcaaaatcaggttgaagaacattgatgtcatcttcagacatagcaatatctttccatatatcatcca |
304 |
Q |
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| T |
23344525 |
catcaaaatcaggttgaagaacattgatgtcatcttcagacatagcaatatctttccatatatcatcca |
23344593 |
T |
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