View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17538_high_3 (Length: 240)
Name: NF17538_high_3
Description: NF17538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17538_high_3 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28101 - 27881
Alignment:
| Q |
1 |
tataagtgaggatgtttttcctaatgggaggaagaaaggccgactaagaccacatgtaagaaagcctaacctccttgaagattacggtcaaggataatgg |
100 |
Q |
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| T |
28101 |
tataagtgaggatgtttttcctaatgggaggaagaaaggccgactaagaccacatgtaagaaagcctaacctccttgaagattacggtcaaggataatgg |
28002 |
T |
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| Q |
101 |
ggagatgatatccctaaaagatgatccttcatgaaaaataggagatagcaagacaacaaatctcaccaggatacaaaggagaagacaacagaggaaacat |
200 |
Q |
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| T |
28001 |
ggagatgatatccctaaaagatgatccttcatgaaaaataggagatagcaagacaacaaatctcaccaggatacaaaggagaagacaacagaggaaacat |
27902 |
T |
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| Q |
201 |
tctacgttggaaatgcaacag |
221 |
Q |
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|||| |||| ||||||||||| |
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| T |
27901 |
tctatgttgaaaatgcaacag |
27881 |
T |
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