View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17538_low_3 (Length: 290)
Name: NF17538_low_3
Description: NF17538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17538_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 43856584 - 43856307
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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| T |
43856584 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
43856485 |
T |
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| Q |
114 |
tctactt-cagtaaaaagacaaaaatatcacataatccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgcgttcatttatc |
212 |
Q |
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| T |
43856484 |
tctactttcagtataaagacaaaaatatcacataatccgcacaatgcacatgacagtcgaactaaaatacattatttacattttgtcgcgttcatttatc |
43856385 |
T |
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| Q |
213 |
gagcaataacaacttttaactatgaatcacggtatcacattaggcataaatcaacatcaaagttaaatttaaaatttc |
290 |
Q |
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| T |
43856384 |
gagcaataacaacgtttaactatgaatcccggtatcgcattaggcataaatcaacatcaaagttaaatttaaaatttc |
43856307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 14243955 - 14244142
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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| T |
14243955 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatctattgatgctaaaa--agtcatttgttttt-caattttgagt |
14244049 |
T |
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| Q |
114 |
tctactt-cagtaaaaagacaaaaatatcacata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
201 |
Q |
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| T |
14244050 |
tctaatttcagtctaaagacaaaaatatcacatacataattcgcacaacgcacatgacagtcgaactaaaatagaatatttacattttgtcgc |
14244142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 1875061 - 1874895
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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|||||||||||||||||| | | || ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
1875061 |
atataaagaataaaatgacaaattt--gtttgtacatttcctttggttccacaccgtctattgatgctaaaataagtcatttgt-ttttcaattttgagt |
1874965 |
T |
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| Q |
114 |
tctact-tcagtaaaaagacaaaaatatcac----ataatccgcacaatgcacatgacagttgaactaaa |
178 |
Q |
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| T |
1874964 |
tctactatcagtataaagacaaaaatatcacataaataatccgcacaatgcacatgagagtcgaactaaa |
1874895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 6354505 - 6354692
Alignment:
| Q |
14 |
atataaagaataaaatgagacagtttggtttgtacatttcctttggttccaccgtgtctattaatgctaaaataaatcatttgttttttcaattttgagt |
113 |
Q |
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||||||| |||||||||| ||| || ||||||||||||||||||||||||| | || ||| ||||||||| | |||||||||||| |||||| |||| |
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| T |
6354505 |
atataaaaaataaaatga--cagatttgtttgtacatttcctttggttccacactatcaattgatgctaaaa--agtcatttgttttt-caatttagagt |
6354599 |
T |
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| Q |
114 |
tctactt-cagtaaaaagacaaaaatatcacata----atccgcacaatgcacatgacagttgaactaaaatacattatttacattttgtcgc |
201 |
Q |
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|||| || ||||| |||||||||||||||||||| || ||||||| | |||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
6354600 |
tctaatttcagtataaagacaaaaatatcacatacataattcgcacaacgaacatgacagtcgaactaaaatagaatatttacattttgtcgc |
6354692 |
T |
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